Strain identifier

BacDive ID: 15343

Type strain: Yes

Species: Streptomyces lavendofoliae

Strain history: KCC S-0391 <-- IFO 12882 <-- SAJ <-- ISP 5217 <-- INA 3613.

NCBI tax ID(s): 67314 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9274

BacDive-ID: 15343

DSM-Number: 40217

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces lavendofoliae DSM 40217 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67314
  • Matching level: species

strain history

@refhistory
9274<- E.B. Shirling, ISP <- N.A. Krassilnikov, INA
67770KCC S-0391 <-- IFO 12882 <-- SAJ <-- ISP 5217 <-- INA 3613.

doi: 10.13145/bacdive15343.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lavendofoliae
  • full scientific name: Streptomyces lavendofoliae (Kuchaeva et al. 1961) Pridham 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces lavendofoliae

@ref: 9274

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lavendofoliae

full scientific name: Streptomyces lavendofoliae (Kuchaeva et al. 1961) Pridham 1970

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.79
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9274
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18559positiveoptimum28mesophilic
9274positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9274
  • compound: streptothricin complex

halophily

  • @ref: 18559
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1855917234glucose+
1855922599arabinose+
1855917992sucrose-
1855918222xylose+
1855917268myo-inositol-
1855929864mannitol-
1855928757fructose-
1855926546rhamnose-
1855916634raffinose-
1855962968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18559++--+-++--+

Isolation, sampling and environmental information

isolation

@refsample typecountrycontinent
9274soilUSSRAsia
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185591German classification
92741Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces lavendofoliae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4391D44106120ena67314
20218Streptomyces lavendofoliae 16S rRNA gene, type strain LMG 19935AJ7813361443ena67314
20218Streptomyces lavendofoliae gene for 16S rRNA, partial sequence, strain: NBRC 12882AB1842171476ena67314

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces lavendofoliae JCM 4391GCA_014649735scaffoldncbi67314
66792Streptomyces lavendofoliae strain JCM 439167314.3wgspatric67314

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.124no
gram-positiveyes91.497no
anaerobicno99.396no
aerobicyes94.37no
halophileno93.199no
spore-formingyes96.053no
thermophileno98.507no
glucose-utilyes90.624no
motileno93.965no
glucose-fermentno90.974no

External links

@ref: 9274

culture collection no.: DSM 40217, ATCC 15872, ATCC 23928, CBS 912.68, IFO 12882, INA 3613, ISP 5217, NBRC 12882, RIA 1161, RIA 750, JCM 4391, BCRC 13795, CGMCC 4.1891, NCIMB 9823, NRRL B-3371, VKM Ac-272

straininfo link

  • @ref: 84436
  • straininfo: 36542

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26307029Streptomyces kanasensis sp. nov., an Antiviral Glycoprotein Producing Actinomycete Isolated from Forest Soil Around Kanas Lake of China.Han L, Zhang G, Miao G, Zhang X, Feng JCurr Microbiol10.1007/s00284-015-0900-02015Actinobacteria, Antiviral Agents/*metabolism, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Forests, Gammaproteobacteria, Glycoproteins/*metabolism, Lakes, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/*isolation & purification/metabolismMetabolism
Phylogeny34382928Streptomyces genisteinicus sp. nov., a novel genistein-producing actinomycete isolated from a Chinese medicinal plant and proposal of Streptomyces michiganensis Corbaz et al. 1957 as a later heterotypic synonym of Streptomyces xanthochromogenes Arishima et al. 1956.Hu S, Li K, Wang Y, Guo Y, Zhou M, Tang X, Gao JInt J Syst Evol Microbiol10.1099/ijsem.0.0049542021Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genistein/*metabolism, Nucleic Acid Hybridization, *Phylogeny, Plant Leaves/microbiology, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/isolation & purification, Xanthium/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9274Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40217)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40217
18559Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40217.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84436Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36542.1StrainInfo: A central database for resolving microbial strain identifiers