Strain identifier

BacDive ID: 15339

Type strain: Yes

Species: Streptomyces katrae

Strain Designation: Jammu Tawi, RRL 5036

Strain history: KCC S-0777 <-- IFO 13447 <-- SAJ <-- ISP 5550 <-- K. C. Gupta RRL 5036.

NCBI tax ID(s): 68223 (species)

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General

@ref: 9633

BacDive-ID: 15339

DSM-Number: 40550

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces katrae Jammu Tawi is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 68223
  • Matching level: species

strain history

@refhistory
9633<- E.B. Shirling, ISP <- K.C. Gupta, Jammu Tawi, RRL, 5036
67770KCC S-0777 <-- IFO 13447 <-- SAJ <-- ISP 5550 <-- K. C. Gupta RRL 5036.

doi: 10.13145/bacdive15339.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces katrae
  • full scientific name: Streptomyces katrae Gupta and Chopra 1963 (Approved Lists 1980)

@ref: 9633

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces katrae

full scientific name: Streptomyces katrae Gupta and Chopra 1963

strain designation: Jammu Tawi, RRL 5036

type strain: yes

Morphology

multimedia

  • @ref: 9633
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40550.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9633GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9633ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9633positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
20216Antibiotic agent
20216Antifungal agent

Isolation, sampling and environmental information

isolation

  • @ref: 9633
  • sample type: soil
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9633
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces katrae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4777D44354120ena68223
20218Streptomyces katrae gene for 16S rRNA, partial sequence, strain: NBRC 13447AB1844091474ena68223
20218Streptomyces katrae strain NRRL B-3093 16S ribosomal RNA gene, partial sequenceEF6540921459ena68223

Genome sequences

  • @ref: 67770
  • description: Streptomyces katrae NRRL ISP-5550
  • accession: GCA_000966975
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 68223

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.939no
flagellatedno97.722no
gram-positiveyes87.192no
anaerobicno99.143no
aerobicyes92.185no
halophileno94.452no
spore-formingyes93.676no
thermophileno99.125no
glucose-utilyes90.589no
glucose-fermentno88.529no

External links

@ref: 9633

culture collection no.: DSM 40550, ATCC 27440, CBS 748.72, IFO 13447, ISP 5550, NBRC 13447, NRRL B-3093, RIA 1408, JCM 4777, BCRC 15199, CGMCC 4.1914, IMET 43361, NCIMB 12981, NRRL ISP-5550, RIA 794, VKM Ac-1220

straininfo link

  • @ref: 84432
  • straininfo: 389341

literature

topicPubmed-IDtitleauthorsjournalyearmeshDOI
Metabolism11558273[The carbohydrate-containing cell wall polymers of some species from the cluster "Streptomyces lavendulae"].Shashkov AS, Kozlova IuI, Streshinskaia GM, Kosmachevskaia LN, Bueva OV, Evtushenko LI, Naumova IBMikrobiologiia2001Cell Wall/metabolism, DNA, Bacterial/metabolism, Mannans/analysis/metabolism, Polymers/analysis/metabolism, Polysaccharides, Bacterial/*analysis/metabolism, Streptomyces/*metabolism, Uronic Acids/analysis/metabolism
Phylogeny26703868Streptomyces yangpuensis sp. nov., isolated from soil.Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding XInt J Syst Evol Microbiol201510.1099/ijsem.0.000861

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9633Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40550)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40550
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
84432Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389341.1StrainInfo: A central database for resolving microbial strain identifiers