Streptomyces katrae (DSM 40550, ATCC 27440, CBS 748.72)

Name: Streptomyces katrae (DSM 40550, ATCC 27440, CBS 748.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15339

Type strain

Strain Designation Jammu Tawi, RRL 5036

Culture col. no. DSM 40550 ATCC 27440 CBS 748.72 IFO 13447 ISP 5550 13 more

NCBI tax ID(s) 68223

Special Collections DSMZ JCM

History <- E.B. Shirling, ISP <- K.C. Gupta, Jammu Tawi, RRL, 5036 KCC S-0777 <-- IFO 13447 <-- SAJ <-- ISP 5550 <-- K. C. Gupta RRL 5036.

Links

Streptomyces katrae Jammu Tawi is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 389341

ATCC 27440,IFO 13447,DSM 40550,NRRL B-3093,JCM 4777,IMET 43361,VKM Ac-1220,NCIMB 12981,CBS 748.72,NBRC 13447,BCRC 15199,CCRC 15199,CGMCC 4.1914

@ref 20215

Last LPSN update 2026-02-09 11:21:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces katrae

Full scientific name Streptomyces katrae Gupta and Chopra 1963 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces katrae** (2)	Type strain
127877	S. katrae ST028243(HKI), A85/21.4, FSU-3754, GT20046047,
127878	S. katrae SF003754(FSU),

Morphology

Multimedia

@ref:	9633
multimedia content:	DSM_40550.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40550.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9633	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9633	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9633	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.619

Compound production

@ref	Compound
20216	Antibiotic agent
20216	Antifungal agent

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
9633	soil	India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9633	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM96697v1 assembly for Streptomyces katrae NRRL ISP-5550	contig	GCA_000966975	68223.23	2767802100	68223

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces katrae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4777	D44354	120	68223
20218	Streptomyces katrae gene for 16S rRNA, partial sequence, strain: NBRC 13447	AB184409	1474	68223
20218	Streptomyces katrae strain NRRL B-3093 16S ribosomal RNA gene, partial sequence	EF654092	1459	68223

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces katrae NRRL ISP-5550
NCBI: GCA_000966975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.53	no
125438	anaerobic	anaerobicⓘ	no	97.29	no
125438	aerobic	aerobicⓘ	yes	87.92	no
125438	spore-forming	spore-formingⓘ	yes	91.62	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	87.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Revealing Genome-Based Biosynthetic Potential of Streptomyces sp. BR123 Isolated from Sunflower Rhizosphere with Broad Spectrum Antimicrobial Activity.	Ashraf N, Zafar S, Makitrynskyy R, Bechthold A, Spiteller D, Song L, Anwar MA, Luzhetskyy A, Khan AN, Akhtar K, Khaliq S.	Antibiotics (Basel)	10.3390/antibiotics11081057	2022
Enzymology	Widely Distributed Bifunctional Bacterial Cytochrome P450 Enzymes Catalyze both Intramolecular C-C Bond Formation in cyclo-l-Tyr-l-Tyr and Its Coupling with Nucleobases.	Liu J, Harken L, Yang Y, Xie X, Li SM.	Angew Chem Int Ed Engl	10.1002/anie.202200377	2022
Genetics	Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils.	Heinsch SC, Hsu SY, Otto-Hanson L, Kinkel L, Smanski MJ.	BMC Genomics	10.1186/s12864-019-6279-8	2019
	Identification and antifungal activity analysis of two biocontrol antagonists to Colletotrichum musae	Shu C, Chen Q, Pi L, Zhang D, Panhwar QA, Zhou E.	Journal of phytopathology.	10.1111/jph.12592	2017
	Streptomyces sp. Strain PBR11, a Forest-Derived Soil Actinomycetia with Antimicrobial Potential.	Mazumdar R, Dutta PP, Saikia J, Borah JC, Thakur D.	Microbiol Spectr	10.1128/spectrum.03489-22	2023
	Ribosomal RNA operons define a central functional compartment in the Streptomyces chromosome.	Lorenzi JN, Thibessard A, Lioy VS, Boccard F, Leblond P, Pernodet JL, Bury-Mone S.	Nucleic Acids Res	10.1093/nar/gkac1076	2022
Metabolism	Expanded natural product diversity revealed by analysis of lanthipeptide-like gene clusters in actinobacteria.	Zhang Q, Doroghazi JR, Zhao X, Walker MC, van der Donk WA.	Appl Environ Microbiol	10.1128/aem.00635-15	2015
Enzymology	Isolation, screening and partial purification of antimicrobial antibiotics from soil Streptomyces sp. SCA 7.	Saravana Kumar P, Duraipandiyan V, Ignacimuthu S.	Kaohsiung J Med Sci	10.1016/j.kjms.2014.05.006	2014
Metabolism	[The carbohydrate-containing cell wall polymers of some species from the cluster "Streptomyces lavendulae"].	Shashkov AS, Kozlova IuI, Streshinskaia GM, Kosmachevskaia LN, Bueva OV, Evtushenko LI, Naumova IB	Mikrobiologiia		2001
Phylogeny	Streptomyces yangpuensis sp. nov., isolated from soil.	Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000861	2015

References

#9633	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40550
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces katrae (DSM 40550, ATCC 27440, CBS 748.72)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000966975

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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