Strain identifier

BacDive ID: 15315

Type strain: No

Species: Streptomyces hygroscopicus

Strain Designation: SF-1293

Strain history: CIP <- 2002, ATCC <- Meiji Seika Kaisha Ltd: strain SF-1293

NCBI tax ID(s): 1912 (species)

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General

@ref: 10376

BacDive-ID: 15315

DSM-Number: 41527

keywords: Bacteria, obligate aerobe, Gram-positive, rod-shaped

description: Streptomyces hygroscopicus SF-1293 is an obligate aerobe, Gram-positive, rod-shaped bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 1912
  • Matching level: species

strain history

@refhistory
10376<- ATCC <- Meiji Seika Kaisha Ltd., SF-1293
120014CIP <- 2002, ATCC <- Meiji Seika Kaisha Ltd: strain SF-1293

doi: 10.13145/bacdive15315.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces hygroscopicus
  • full scientific name: Streptomyces hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces hygroscopicus
    20215Streptomyces hygroscopicus subsp. sporocinereus
    20215Streptomyces sporocinereus
    20215Streptomyces endus

@ref: 10376

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces hygroscopicus

full scientific name: Streptomyces hygroscopicus (Jensen 1931) Yüntsen et al. 1956 emend. Labeda and Lyons 1991

strain designation: SF-1293

type strain: no

Morphology

cell morphology

  • @ref: 120014
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 120014

multimedia

  • @ref: 10376
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41527.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34660MEDIUM 128 - for Nocardia brevicatena, Nocardia flavorosea subsp. fusca and Streptomyces ambofaciensyesDistilled water make up to (1000.000 ml);Maltose (10.000 g);Agar (20.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g)
120014CIP Medium 129yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=129

culture temp

@refgrowthtypetemperature
34660positivegrowth25
120014positivegrowth25-37
120014nogrowth10
120014nogrowth41
120014nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 120014
  • oxygen tolerance: obligate aerobe

compound production

  • @ref: 10376
  • compound: antifungal antibiotic SF-1293

halophily

@refsaltgrowthtested relationconcentration
120014NaClpositivegrowth0 %
120014NaClnogrowth2 %
120014NaClnogrowth4 %
120014NaClnogrowth6 %
120014NaClnogrowth8 %
120014NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12001416947citrate-carbon source
1200144853esculin-hydrolysis
120014606565hippurate+hydrolysis
12001417632nitrate-reduction
12001416301nitrite-reduction
12001417632nitrate-respiration

antibiotic resistance

  • @ref: 120014
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 120014
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12001415688acetoin-
12001417234glucose+

enzymes

@refvalueactivityec
120014oxidase-
120014beta-galactosidase+3.2.1.23
120014alcohol dehydrogenase-1.1.1.1
120014gelatinase-
120014amylase+
120014DNase+
120014caseinase-3.4.21.50
120014catalase+1.11.1.6
120014tween esterase+
120014gamma-glutamyltransferase+2.3.2.2
120014lecithinase+
120014lipase+
120014lysine decarboxylase-4.1.1.18
120014ornithine decarboxylase-4.1.1.17
120014phenylalanine ammonia-lyase-4.3.1.24
120014protease+
120014tryptophan deaminase-
120014urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120014-+---+----++-----+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120014+-+++-+-+++-------++------+----+---+-+---------------------++------------+-+---++---+---+++++++--+-

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
103761Risk group (German classification)
1200141Risk group (French classification)

External links

@ref: 10376

culture collection no.: DSM 41527, ATCC 21705, CIP 107674, KCTC 9030

straininfo link

  • @ref: 84407
  • straininfo: 37682

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Enzymology1284272[Chromosomal determinant of Streptomyces hygroscopicus with positive influence on resistance to bialaphos controlled by the bar gene].Tabakov VIu, Tokmakova IL, Sezonov GVAntibiot Khimioter1992Anti-Bacterial Agents/*pharmacology, Arylamine N-Acetyltransferase/metabolism, Chromosomes, Bacterial/*physiology, Cloning, Molecular, DNA, Bacterial, Drug Resistance, Microbial, *Genes, Bacterial, Nucleic Acid Hybridization, Organophosphorus Compounds/*pharmacology, Phenotype, Plasmids/genetics, RNA, Bacterial/genetics, Streptomyces/drug effects/*genetics, Transcription, Genetic/geneticsPhylogeny
Enzymology1368511Purification and characterization of citrate synthase from Streptomyces hygroscopicus SF-1293 and comparison of its properties with those of 2-phosphinomethylmalic acid synthase.Shimotohno KW, Imai S, Murakami T, Seto HAgric Biol Chem1990Amino Acid Sequence, Base Sequence, Citrate (si)-Synthase/genetics/isolation & purification/*metabolism, Cloning, Molecular, DNA, Bacterial/genetics, Kinetics, Molecular Sequence Data, Oxo-Acid-Lyases/genetics/*metabolism, Restriction Mapping, Streptomyces/*enzymology/geneticsMetabolism
Metabolism1624380Studies on the biosynthesis of bialaphos (SF-1293) 12. C-P bond formation mechanism of bialaphos: discovery of a P-methylation enzyme.Kamigiri K, Hidaka T, Imai S, Murakami T, Seto HJ Antibiot (Tokyo)1992Herbicides/*metabolism/pharmacology, Methylation/drug effects, Multigene Family, Organophosphorus Compounds/*metabolism/pharmacology, Streptomyces/genetics/*metabolism, Substrate SpecificityEnzymology10.7164/antibiotics.45.781
Enzymology3170341Studies on the biosynthesis of bialaphos (SF-1293). 8. Purification and characterization of 2-phosphinomethylmalic acid synthase from Streptomyces hygroscopicus SF-1293.Shimotohno KW, Seto H, Otake N, Imai S, Murakami TJ Antibiot (Tokyo)1988Chromatography, Gel, Citrate (si)-Synthase/isolation & purification, Hydrogen-Ion Concentration, Malate Synthase/*isolation & purification, Malates/*biosynthesis, Molecular Weight, Organophosphorus Compounds/*biosynthesis, Oxo-Acid-Lyases/*isolation & purification, Streptomyces/*enzymology/metabolismPhylogeny10.7164/antibiotics.41.1057
Biotechnology6838580Studies on the biosynthesis of bialaphos (SF-1293) Part 3. Production of phosphinic acid derivatives, MP-103, MP-104 and MP-105, by a blocked mutant of Streptomyces hygroscopicus SF-1293 and their roles in the biosynthesis of bialaphos.Seto H, Imai S, Tsuruoka T, Ogawa H, Satoh A, Sasaki T, Otake NBiochem Biophys Res Commun1983Biotransformation, Chemical Phenomena, Chemistry, Mutation, Organophosphorus Compounds/*biosynthesis, Phosphinic Acids/*biosynthesis/physiology, Streptomyces/genetics/*metabolismMetabolism10.1016/0006-291x(83)91400-6
Metabolism8045395[Molecular-genetic study of the functional role of the regulatory gene brpB of the bialaphos producer Streptomyces hygroscopicus ATCC21705].Tabakov VIu, Tokmakova IL, Voeikova TAGenetika1994Anti-Bacterial Agents/*biosynthesis, Bacterial Proteins/*genetics, Conjugation, Genetic, DNA, Bacterial, *Genes, Regulator, Nucleic Acid Conformation, Organophosphorus Compounds/*metabolism, Plasmids, Restriction Mapping, Streptomyces/*genetics/metabolism
Genetics17632514Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide.Blodgett JA, Thomas PM, Li G, Velasquez JE, van der Donk WA, Kelleher NL, Metcalf WWNat Chem Biol2007Aminobutyrates/chemistry, Anti-Bacterial Agents/chemistry/*pharmacology, Carbon/chemistry, Chemistry, Pharmaceutical/methods, Chromatography, Liquid/methods, Herbicides/pharmacology, Magnetic Resonance Spectroscopy, Mass Spectrometry/methods, Models, Chemical, Molecular Sequence Data, Mutation, Organophosphonates/chemistry, Peptides/chemistry/*pharmacology, Streptomyces/metabolism, Technology, Pharmaceutical/methodsMetabolism10.1038/nchembio.2007.9

Reference

@idauthorscataloguedoi/urltitle
10376Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41527)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41527
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34660Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5135
68382Automatically annotated from API zym
84407Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37682.1StrainInfo: A central database for resolving microbial strain identifiers
120014Curators of the CIPCollection of Institut Pasteur (CIP 107674)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107674