Strain identifier
BacDive ID: 152856
Type strain: 
Species: Filifactor alocis
NCBI tax ID(s): 546269 (strain), 143361 (species)
version 8.1 (current version)
General
@ref: 57874
BacDive-ID: 152856
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Filifactor alocis CCUG 47790 is an anaerobe, mesophilic bacterium that was isolated from Human gingival sulcus.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 143361 | species |
| 546269 | strain |
doi: 10.13145/bacdive152856.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Filifactor
- species: Filifactor alocis
- full scientific name: Filifactor alocis (Cato et al. 1985) Jalava and Eerola 1999
synonyms
- @ref: 20215
- synonym: Fusobacterium alocis
@ref: 57874
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Peptostreptococcaceae
genus: Filifactor
species: Filifactor alocis
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.528 | |
| 69480 | 99.72 | positive |
colony morphology
- @ref: 57874
- incubation period: 3 days
Culture and growth conditions
culture temp
- @ref: 57874
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 57874 | anaerobe | |
| 69480 | anaerobe | 99.659 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.991 |
| 69481 | no | 96 |
Isolation, sampling and environmental information
isolation
- @ref: 57874
- sample type: Human gingival sulcus
- geographic location: Virginia
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Gingiva |
| #Infection | #Patient | |
| #Host Body-Site | #Other | #Wound |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Filifactor alocis ATCC 35896 | GCA_000163895 | complete | ncbi | 546269 |
| 66792 | Filifactor alocis ATCC 35896 | 546269.5 | complete | patric | 546269 |
| 66792 | Filifactor alocis ATCC 35896 | 2511231077 | complete | img | 546269 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 96 | no |
| motile | no | 92.229 | no |
| flagellated | no | 98.432 | no |
| gram-positive | yes | 83.448 | no |
| anaerobic | yes | 98.996 | yes |
| aerobic | no | 98.332 | yes |
| halophile | no | 64.086 | no |
| spore-forming | no | 69.974 | no |
| thermophile | no | 93.983 | yes |
| glucose-util | yes | 80.528 | no |
| glucose-ferment | no | 54.9 | no |
External links
@ref: 57874
culture collection no.: CCUG 47790, ATCC 35896
straininfo link
- @ref: 106757
- straininfo: 41356
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10555315 | Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov. | Jalava J, Eerola E | Int J Syst Bacteriol | 10.1099/00207713-49-4-1375 | 1999 | Animals, Cats, DNA, Ribosomal/genetics, Eubacterium/*classification/genetics, Fusobacterium/*classification/*genetics, Fusobacterium Infections/microbiology, *Genes, rRNA, Humans, Molecular Sequence Data, *Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Terminology as Topic | Pathogenicity |
| Phylogeny | 21825062 | Filifactor alocis has virulence attributes that can enhance its persistence under oxidative stress conditions and mediate invasion of epithelial cells by porphyromonas gingivalis. | Aruni AW, Roy F, Fletcher HM | Infect Immun | 10.1128/IAI.05631-11 | 2011 | Bacteria, Anaerobic/classification/genetics/*pathogenicity/physiology, Bacterial Adhesion, Bacterial Proteins/genetics/metabolism, Biofilms/growth & development, Coculture Techniques, Colony Count, Microbial, Epithelial Cells/*microbiology/ultrastructure, Gram-Positive Cocci/classification/genetics/*pathogenicity/physiology, HeLa Cells, Humans, Microscopy, Electron, Transmission, Oxidative Stress/*physiology, Porphyromonas gingivalis/*pathogenicity, Proteome, Virulence, Virulence Factors/genetics/*metabolism | Metabolism |
| Metabolism | 23008013 | Proteome variation among Filifactor alocis strains. | Aruni AW, Roy F, Sandberg L, Fletcher HM | Proteomics | 10.1002/pmic.201200211 | 2012 | Amino Acids/metabolism, Bacterial Proteins/*analysis/chemistry/metabolism, Electrophoresis, Gel, Two-Dimensional, Gram-Positive Endospore-Forming Rods/*chemistry/*metabolism, HeLa Cells, Host-Pathogen Interactions, Humans, Proteome/*analysis/chemistry, Virulence Factors/metabolism | Pathogenicity |
| Pathogenicity | 24866790 | Proteome analysis of coinfection of epithelial cells with Filifactor alocis and Porphyromonas gingivalis shows modulation of pathogen and host regulatory pathways. | Aruni AW, Zhang K, Dou Y, Fletcher H | Infect Immun | 10.1128/IAI.01727-14 | 2014 | Epithelial Cells/*immunology/*microbiology/ultrastructure, Gram-Positive Bacteria/growth & development/*immunology/physiology, HeLa Cells, *Host-Pathogen Interactions, Humans, Membrane Microdomains/ultrastructure, *Microbial Interactions, Porphyromonas gingivalis/growth & development/*immunology/physiology, Proteome/*analysis | Proteome |
| Metabolism | 26843282 | Genome sequence and virulence factors of a group G Streptococcus dysgalactiae subsp. equisimilis strain with a new element carrying erm(B). | Wang X, Zhang X, Zong Z | Sci Rep | 10.1038/srep20389 | 2016 | Anti-Bacterial Agents/pharmacology, Bacterial Proteins/*genetics/metabolism, DNA Transposable Elements/genetics, Drug Resistance, Bacterial/drug effects/genetics, Exotoxins/genetics/metabolism, *Genome, Bacterial, Phylogeny, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Analysis, DNA, Streptococcus/classification/*genetics/metabolism, Streptolysins/genetics/metabolism, Virulence Factors/*genetics | Phylogeny |
| Metabolism | 32513978 | Role of Superoxide Reductase FA796 in Oxidative Stress Resistance in Filifactor alocis. | Mishra A, Aja E, Fletcher HM | Sci Rep | 10.1038/s41598-020-65806-3 | 2020 | Amino Acid Sequence, Biofilms/growth & development, Cells, Cultured, Clostridiales/*metabolism/*physiology, Epithelial Cells/microbiology, Humans, Hydrogen Peroxide/metabolism, Oxidation-Reduction, Oxidative Stress/*physiology, Oxidoreductases/*metabolism, Recombinant Proteins/metabolism | Enzymology |
| Phylogeny | 33143036 | Phylogenetic Analysis of Filifactor alocis Strains Isolated from Several Oral Infections Identified a Novel RTX Toxin, FtxA. | Oscarsson J, Claesson R, Bao K, Brundin M, Belibasakis GN | Toxins (Basel) | 10.3390/toxins12110687 | 2020 | Adolescent, Adult, Aged, Bacterial Infections/*microbiology, Bacterial Toxins/*genetics, Clostridiales/*genetics/isolation & purification, DNA, Bacterial/analysis, Genome, Bacterial, Humans, Middle Aged, Mouth Diseases/*microbiology, Phylogeny, Young Adult | Pathogenicity |
| Phylogeny | 33586648 | Criibacterium bergeronii gen. nov., sp. nov., a new member of the family Peptostreptococcaceae, isolated from human clinical samples. | Maheux AF, Boudreau DK, Abed JY, Berube E, Brodeur S, Bernard KA, Hashimi A, Ducrey E, Guay EF, Raymond F, Corbeil J, Domingo MC, Roy PH, Boissinot M, Tocheva EI, Omar RF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004691 | 2021 | ||
| Proteome | 36144428 | Extracellular Vesicle Subproteome Differences among Filifactor alocis Clinical Isolates. | Bao K, Claesson R, Belibasakis GN, Oscarsson J | Microorganisms | 10.3390/microorganisms10091826 | 2022 | ||
| 36363792 | Analysis of Chemical Structure and Antibiofilm Properties of Exopolysaccharides from Lactiplantibacillus plantarum EIR/IF-1 Postbiotics. | Karaca B, Haliscelik O, Gursoy M, Kiran F, Loimaranta V, Soderling E, Gursoy UK | Microorganisms | 10.3390/microorganisms10112200 | 2022 |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 57874 | Curators of the CCUG | https://www.ccug.se/strain?id=47790 | Culture Collection University of Gothenburg (CCUG) (CCUG 47790) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 106757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID41356.1 |