Filifactor alocis (CCUG 47790, ATCC 35896)

Name: Filifactor alocis (CCUG 47790, ATCC 35896)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 152856

Type strain

Culture col. no. CCUG 47790 ATCC 35896

NCBI tax ID(s) 546269 143361

Special Collections CCUG

Links

Filifactor alocis CCUG 47790 is an anaerobe bacterium that was isolated from Human gingival sulcus.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41356

ATCC 35896,CCUG 47790

@ref 20215

Last LPSN update 2026-05-29 08:42:41

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Peptostreptococcales

Family Peptostreptococcaceae

Genus Filifactor

Species Filifactor alocis

Full scientific name Filifactor alocis (Cato et al. 1985) Jalava and Eerola 1999

Synonyms (1)

Fusobacterium alocis

BacDive ID	Other strains from **Filifactor alocis** (2)	Type strain
154153	F. alocis CCUG 52582 B
155255	F. alocis CCUG 57083

Morphology

Colony morphology

57874

Incubation period3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
57874	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57874	anaerobe
125438	anaerobe	94.467
125439	facultative anaerobe	96.59

Spore formation

@ref	Spore formation	Confidence
125439		93.226

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	NAD metabolism	83.33	15 of 18
66794	peptidoglycan biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	biotin biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	photosynthesis	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	alanine metabolism	68.97	20 of 29
66794	pyrimidine metabolism	68.89	31 of 45
66794	enterobactin biosynthesis	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	gluconeogenesis	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	purine metabolism	59.57	56 of 94
66794	glycolysis	58.82	10 of 17
66794	lipid metabolism	58.06	18 of 31
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	suberin monomers biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	sulfopterin metabolism	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	glycogen biosynthesis	50	2 of 4
66794	vitamin B1 metabolism	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	starch degradation	40	4 of 10
66794	propionate fermentation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	non-pathway related	39.47	15 of 38
66794	oxidative phosphorylation	38.46	35 of 91
66794	histidine metabolism	37.93	11 of 29
66794	ketogluconate metabolism	37.5	3 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
66794	pentose phosphate pathway	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	isoprenoid biosynthesis	34.62	9 of 26
66794	nitrate assimilation	33.33	3 of 9
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	formaldehyde oxidation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	lysine metabolism	33.33	14 of 42
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	chorismate metabolism	33.33	3 of 9
66794	d-mannose degradation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	leucine metabolism	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	urea cycle	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	citric acid cycle	28.57	4 of 14
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	glutathione metabolism	28.57	4 of 14
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of pentoses	28.57	8 of 28
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	isoleucine metabolism	25	2 of 8
66794	degradation of aromatic, nitrogen containing compounds	25	3 of 12
66794	degradation of sugar alcohols	25	4 of 16
66794	cyclohexanol degradation	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	lipid A biosynthesis	22.22	2 of 9
66794	valine metabolism	22.22	2 of 9
66794	heme metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Infection	#Patient	-
#Host Body-Site	#Other	#Wound

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
57874	Human gingival sulcus	Homo sapiens	Virginia	USA	USA	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16389v2 assembly for Filifactor alocis ATCC 35896	complete	GCA_000163895	546269.21	2511231077	546269	98.94
66792	Filifactor alocis ATCC 35896	complete		546269.5		546269	72.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Fusobacterium alocis 16S ribosomal RNA, partial	AJ006962	1476		143361

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Filifactor alocis ATCC 35896
BV-BRC: 546269.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.59	no
125439	gram_stain	BacteriaNetⓘ	positive	50.63	no
125439	spore_formation	BacteriaNetⓘ	yes	93.23	no
125439	motility	BacteriaNetⓘ	yes	73.67	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Filifactor alocis ATCC 35896 ATCC 35896
NCBI: GCA_000163895.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.17	no
125438	anaerobic	anaerobicⓘ	yes	94.47	yes
125438	aerobic	aerobicⓘ	no	99.51	yes
125438	spore-forming	spore-formingⓘ	no	67.12	no
125438	thermophilic	thermophileⓘ	no	88.81	yes
125438	flagellated	motile2+ⓘ	no	85.24	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Cytokine release and NLRP3 inflammasome activation induced by low-abundance oral bacterial biofilms.	Karched M, Guleri Bhardwaj R, Abu Al-Melh M, Qudeimat MA.	J Oral Microbiol	10.1080/20002297.2025.2552167	2025
Pathogenicity	Aggregatibacter actinomycetemcomitans and Filifactor alocis: Two exotoxin-producing oral pathogens.	Ozuna H, Snider I, Belibasakis GN, Oscarsson J, Johansson A, Uriarte SM.	Front Oral Health	10.3389/froh.2022.981343	2022
	Proteomic Characterization of the Oral Pathogen Filifactor alocis Reveals Key Inter-Protein Interactions of Its RTX Toxin: FtxA.	Bao K, Claesson R, Gehrig P, Grossmann J, Oscarsson J, Belibasakis GN.	Pathogens	10.3390/pathogens11050590	2022
	Subgingival bacteria in Ghanaian adolescents with or without progression of attachment loss.	Dahlen G, Claesson R, Aberg CH, Haubek D, Johansson A, Kwamin F.	J Oral Microbiol	10.3402/jom.v6.23977	2014
Pathogenicity	Filifactor alocis Pathogenicity Requires TLR2 and the Oral Microbiome.	Vashishta A, Li L, Srivastava S, Sharma T, Jin S, Barati M, Scott DA, Lamont RJ, Diaz PI, Uriarte SM.	J Dent Res	10.1177/00220345251331959	2025
	Induction of TNF-alpha by Filifactor alocis in THP-1 macrophagic cells.	Kim SH, Kang IC.	Arch Oral Biol	10.1016/j.archoralbio.2023.105806	2023
	Filifactor alocis enhances survival of Porphyromonas gingivalis W83 in response to H₂ O₂ -induced stress.	Mishra A, Dou Y, Wang C, Fletcher HM.	Mol Oral Microbiol	10.1111/omi.12445	2024
Genetics	Whole Genome Sequencing and Phenotypic Analysis of Antibiotic Resistance in Filifactor alocis Isolates.	Romero-Martinez R, Maher A, Alvarez G, Figueiredo R, Leon R, Arredondo A.	Antibiotics (Basel)	10.3390/antibiotics12061059	2023
Pathogenicity	Synergistic induction of PGE2 by oral pathogens and TNF promotes gingival fibroblast-driven stromal-immune cross-talk in periodontitis.	Nieboga E, Schuster A, Drapala DM, Melnykova M, Gut A, Lipska W, Kwitniewski M, Migaczewski M, Czesnikiewicz-Guzik M, Kaczmarzyk T, Potempa J, Grabiec AM.	mBio	10.1128/mbio.00046-25	2025
	Characterization of FA1654: A putative DPS protein in Filifactor alocis.	Mangar M, Mishra A, Yang Z, Deivanayagam C, Fletcher HM.	Mol Oral Microbiol	10.1111/omi.12398	2023
Pathogenicity	Filifactor alocis: Recent Insights and Advances.	Aja E, Mangar M, Fletcher HM, Mishra A.	J Dent Res	10.1177/00220345211000656	2021
	Aggregatibacter actinomycetemcomitans and Filifactor alocis as Associated with Periodontal Attachment Loss in a Cohort of Ghanaian Adolescents.	Razooqi Z, Hoglund Aberg C, Kwamin F, Claesson R, Haubek D, Oscarsson J, Johansson A, Johansson A.	Microorganisms	10.3390/microorganisms10122511	2022
	Tobacco smoke exacerbates Filifactor alocis pathogenicity.	Iskander MMZ, Lamont GJ, Tan J, Pisano M, Uriarte SM, Scott DA.	J Clin Periodontol	10.1111/jcpe.13729	2023
	The Varied Proportion of Filifactor alocis in Periodontal Health and Disease in the South Indian Subpopulation.	Neelakandan A, Potluri R, Yadalam PK, Chakraborty P, Saravanan AV, Arunraj R.	Contemp Clin Dent	10.4103/ccd.ccd_803_20	2021
	Enhancement of innate immunity in gingival epithelial cells by vitamin D and HDAC inhibitors.	Figgins EL, Arora P, Gao D, Porcelli E, Ahmed R, Daep CA, Keele G, Ryan LK, Diamond G.	Front Oral Health	10.3389/froh.2024.1378566	2024
	Dosage constraint of the ribosome-associated molecular chaperone drives the evolution and fates of its duplicates in bacteria.	Wan T, Zhuo L, Pan Z, Chen R-y, Ma H, Cao Y, Wang J, Wang J-j, Hu W-f, Lai Y-j, Hayat M, Li Y-z.	mBio	10.1128/mbio.01994-24	2024
Metabolism	Role of the Filifactor alocis Hypothetical Protein FA519 in Oxidative Stress Resistance.	Aja E, Mishra A, Dou Y, Fletcher HM.	Microbiol Spectr	10.1128/spectrum.01212-21	2021
Genetics	ICESp1109, a Novel Hybrid Integrative Conjugative Element of Macrolide-Resistant Streptococcus pyogenes Serotype M77 Collected Between 2003 and 2017 in Poland.	Gawor J, Zuchniewicz K, Ojeda Saavedra M, Beres SB, Kiedrowska M, Wrobel-Pawelczyk I, Kozinska A, Gromadka R, Musser JM, Sitkiewicz I, Kern-Zdanowicz I.	J Infect Dis	10.1093/infdis/jiae473	2025
Metabolism	Regulation of Cyclooxygenase 2 by Filifactor alocis in Fibroblastic and Monocytic Cells.	Nokhbehsaim M, Nogueira AVB, Nietzsche S, Eick S, Deschner J.	Mediators Inflamm	10.1155/2020/4185273	2020
Pathogenicity	Anti-Inflammatory Efficacy of Human-Derived Streptococcus salivarius on Periodontopathogen-Induced Inflammation.	Baek DH, Lee SH.	J Microbiol Biotechnol	10.4014/jmb.2302.02002	2023
	Periodontal disease severity is associated to pathogenic consortia comprising putative and candidate periodontal pathogens.	Araujo LL, Lourenco TGB, Colombo APV.	J Appl Oral Sci	10.1590/1678-7757-2022-0359	2023
	In Situ Intraepithelial Localizations of Opportunistic Pathogens, Porphyromonas gingivalis and Filifactor alocis, in Human Gingiva.	Lee JS, Spooner R, Chowdhury N, Pandey V, Wellslager B, Atanasova KR, Evans Z, Yilmaz O.	Curr Res Microb Sci	10.1016/j.crmicr.2020.05.001	2020
	Effects of extracellular vesicles derived from oral bacteria on osteoclast differentiation and activation.	Kim HY, Song MK, Lim Y, Jang JS, An SJ, Kim HH, Choi BK.	Sci Rep	10.1038/s41598-022-18412-4	2022
	An In Vitro study to Compare Dental Laser with other Treatment Modalities on Biofilm Ablation from Implant and Tooth Surfaces.	Vaddamanu SK, Vyas R, Kavita K, Sushma R, Rani RP, Dixit A, Badiyani BK.	J Pharm Bioallied Sci	10.4103/jpbs.jpbs_98_22	2022
	Steady-State Pre-rRNA Analysis to Investigate the Functional Microbiome.	Weigel KM, Olson AM, Cangelosi GA.	Curr Protoc	10.1002/cpz1.209	2021
Metabolism	Extracellular vesicles derived from the periodontal pathogen Filifactor alocis induce systemic bone loss through Toll-like receptor 2.	Kim HY, Song MK, Gho YS, Kim HH, Choi BK.	J Extracell Vesicles	10.1002/jev2.12157	2021
	Environmental influences on Streptococcus sanguinis membrane vesicle biogenesis.	Helliwell E, Choi D, Merritt J, Kreth J.	ISME J	10.1038/s41396-023-01456-3	2023
	Oral community interactions of Filifactor alocis in vitro.	Wang Q, Wright CJ, Dingming H, Uriarte SM, Lamont RJ.	PLoS One	10.1371/journal.pone.0076271	2013
Phylogeny	Microbiota in Human Periodontal Abscess Revealed by 16S rDNA Sequencing.	Chen J, Wu X, Zhu D, Xu M, Yu Y, Yu L, Zhang W.	Front Microbiol	10.3389/fmicb.2019.01723	2019
Metabolism	FACIN, a Double-Edged Sword of the Emerging Periodontal Pathogen Filifactor alocis: A Metabolic Enzyme Moonlighting as a Complement Inhibitor.	Jusko M, Miedziak B, Ermert D, Magda M, King BC, Bielecka E, Riesbeck K, Eick S, Potempa J, Blom AM.	J Immunol	10.4049/jimmunol.1600739	2016
Pathogenicity	Filifactor alocis collagenase can modulate apoptosis of normal oral keratinocytes.	Chioma O, Aruni AW, Milford TA, Fletcher HM.	Mol Oral Microbiol	10.1111/omi.12163	2017
Metabolism	In Situ Anabolic Activity of Periodontal Pathogens Porphyromonas gingivalis and Filifactor alocis in Chronic Periodontitis.	Spooner R, Weigel KM, Harrison PL, Lee K, Cangelosi GA, Yilmaz O.	Sci Rep	10.1038/srep33638	2016
	Sputum Microbiome Composition in Patients with Squamous Cell Lung Carcinoma.	Baranova E, Druzhinin V, Matskova L, Demenkov P, Volobaev V, Minina V, Larionov A, Titov V.	Life (Basel)	10.3390/life12091365	2022
Pathogenicity	Marijuana-Derived Cannabinoids Trigger a CB2/PI3K Axis of Suppression of the Innate Response to Oral Pathogens.	Gu Z, Singh S, Niyogi RG, Lamont GJ, Wang H, Lamont RJ, Scott DA.	Front Immunol	10.3389/fimmu.2019.02288	2019
	In vitro culture of previously uncultured oral bacterial phylotypes.	Thompson H, Rybalka A, Moazzez R, Dewhirst FE, Wade WG.	Appl Environ Microbiol	10.1128/aem.02156-15	2015
	The Antimicrobial Properties of Cannabis and Cannabis-Derived Compounds and Relevance to CB2-Targeted Neurodegenerative Therapeutics.	Hong H, Sloan L, Saxena D, Scott DA.	Biomedicines	10.3390/biomedicines10081959	2022
	Estimation of bacterial hydrogen sulfide production in vitro.	Basic A, Blomqvist S, Carlen A, Dahlen G.	J Oral Microbiol	10.3402/jom.v7.28166	2015
	TLR4, NOD1 and NOD2 mediate immune recognition of putative newly identified periodontal pathogens.	Marchesan J, Jiao Y, Schaff RA, Hao J, Morelli T, Kinney JS, Gerow E, Sheridan R, Rodrigues V, Paster BJ, Inohara N, Giannobile WV.	Mol Oral Microbiol	10.1111/omi.12116	2016
Pathogenicity	Filifactor alocis modulates human neutrophil antimicrobial functional responses.	Edmisson JS, Tian S, Armstrong CL, Vashishta A, Klaes CK, Miralda I, Jimenez-Flores E, Le J, Wang Q, Lamont RJ, Uriarte SM.	Cell Microbiol	10.1111/cmi.12829	2018
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
Enzymology	Microbial diversity similarities in periodontal pockets and atheromatous plaques of cardiovascular disease patients.	Serra e Silva Filho W, Casarin RC, Nicolela EL, Passos HM, Sallum AW, Goncalves RB.	PLoS One	10.1371/journal.pone.0109761	2014
Metabolism	Metabolic plasticity enables lifestyle transitions of Porphyromonas gingivalis.	Moradali MF, Davey ME.	NPJ Biofilms Microbiomes	10.1038/s41522-021-00217-4	2021
	Filifactor alocis--a new emerging periodontal pathogen.	Aruni AW, Mishra A, Dou Y, Chioma O, Hamilton BN, Fletcher HM.	Microbes Infect	10.1016/j.micinf.2015.03.011	2015
Transcriptome	Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System.	Liu MM, Boinett CJ, Chan ACK, Parkhill J, Murphy MEP, Gaynor EC.	mBio	10.1128/mbio.01347-18	2018
	Quantitative and qualitative analysis of microorganisms in root-filled teeth with persistent infection: Monitoring of the endodontic retreatment.	Endo MS, Ferraz CCR, Zaia AA, Almeida JFA, Gomes BPFA.	Eur J Dent	10.4103/1305-7456.115414	2013
Genetics	Evaluation of the Persistence of Higher-Order Strand Symmetry in Genomic Sequences by Novel Word Symmetry Distance Analysis.	Huang B, Huang LF, Zhang SH.	Front Genet	10.3389/fgene.2019.00148	2019
Metabolism	Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification.	Haft DH, Basu MK.	J Bacteriol	10.1128/jb.00040-11	2011
	In Vitro-Activity of Er:YAG Laser in Comparison with other Treatment Modalities on Biofilm Ablation from Implant and Tooth Surfaces.	Eick S, Meier I, Spoerle F, Bender P, Aoki A, Izumi Y, Salvi GE, Sculean A.	PLoS One	10.1371/journal.pone.0171086	2017
	Diverse CRISPRs evolving in human microbiomes.	Rho M, Wu YW, Tang H, Doak TG, Ye Y.	PLoS Genet	10.1371/journal.pgen.1002441	2012
	Profiling of Oral Microbiota in Early Childhood Caries Using Single-Molecule Real-Time Sequencing.	Wang Y, Zhang J, Chen X, Jiang W, Wang S, Xu L, Tu Y, Zheng P, Wang Y, Lin X, Chen H.	Front Microbiol	10.3389/fmicb.2017.02244	2017
	Microbial Biofilm Decontamination on Dental Implant Surfaces: A Mini Review.	Dhaliwal JS, Abd Rahman NA, Ming LC, Dhaliwal SKS, Knights J, Albuquerque Junior RF.	Front Cell Infect Microbiol	10.3389/fcimb.2021.736186	2021
Metabolism	Gingipains from the Periodontal Pathogen Porphyromonas gingivalis Play a Significant Role in Regulation of Angiopoietin 1 and Angiopoietin 2 in Human Aortic Smooth Muscle Cells.	Zhang B, Khalaf H, Sirsjo A, Bengtsson T.	Infect Immun	10.1128/iai.00498-15	2015
	The Evaluation of the Effects of Two Probiotic Strains on the Oral Ecosystem: A Randomized Clinical Trial.	Volgenant CMC, van der Waal SV, Brandt BW, Buijs MJ, van der Veen MH, Rosema NAM, Fiebich BL, Rose T, Schmitter T, Gajfulin M, Crielaard W, Zaura E.	Front Oral Health	10.3389/froh.2022.825017	2022
Phylogeny	Uncultivated phylotypes and newly named species associated with primary and persistent endodontic infections.	Siqueira JF, Rocas IN.	J Clin Microbiol	10.1128/jcm.43.7.3314-3319.2005	2005
Pathogenicity	Proteome analysis of coinfection of epithelial cells with Filifactor alocis and Porphyromonas gingivalis shows modulation of pathogen and host regulatory pathways.	Aruni AW, Zhang K, Dou Y, Fletcher H	Infect Immun	10.1128/IAI.01727-14	2014
Metabolism	Proteome variation among Filifactor alocis strains.	Aruni AW, Roy F, Sandberg L, Fletcher HM	Proteomics	10.1002/pmic.201200211	2012
Phylogeny	Filifactor alocis has virulence attributes that can enhance its persistence under oxidative stress conditions and mediate invasion of epithelial cells by porphyromonas gingivalis.	Aruni AW, Roy F, Fletcher HM	Infect Immun	10.1128/IAI.05631-11	2011
Phylogeny	Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov.	Jalava J, Eerola E	Int J Syst Bacteriol	10.1099/00207713-49-4-1375	1999
Phylogeny	Phylogenetic Analysis of Filifactor alocis Strains Isolated from Several Oral Infections Identified a Novel RTX Toxin, FtxA.	Oscarsson J, Claesson R, Bao K, Brundin M, Belibasakis GN	Toxins (Basel)	10.3390/toxins12110687	2020
Metabolism	Role of Superoxide Reductase FA796 in Oxidative Stress Resistance in Filifactor alocis.	Mishra A, Aja E, Fletcher HM	Sci Rep	10.1038/s41598-020-65806-3	2020
Metabolism	Genome sequence and virulence factors of a group G Streptococcus dysgalactiae subsp. equisimilis strain with a new element carrying erm(B).	Wang X, Zhang X, Zong Z	Sci Rep	10.1038/srep20389	2016
	Analysis of Chemical Structure and Antibiofilm Properties of Exopolysaccharides from Lactiplantibacillus plantarum EIR/IF-1 Postbiotics.	Karaca B, Haliscelik O, Gursoy M, Kiran F, Loimaranta V, Soderling E, Gursoy UK	Microorganisms	10.3390/microorganisms10112200	2022
Proteome	Extracellular Vesicle Subproteome Differences among Filifactor alocis Clinical Isolates.	Bao K, Claesson R, Belibasakis GN, Oscarsson J	Microorganisms	10.3390/microorganisms10091826	2022
	Draft Genome Sequence of Criibacterium bergeronii gen. nov., sp. nov., Strain CCRI-22567T, Isolated from a Vaginal Sample from a Woman with Bacterial Vaginosis.	Maheux AF, Berube E, Boudreau DK, Raymond F, Corbeil J, Roy PH, Boissinot M, Omar RF.	Genome Announc	10.1128/genomea.00959-16	2016
Phylogeny	Criibacterium bergeronii gen. nov., sp. nov., a new member of the family Peptostreptococcaceae, isolated from human clinical samples.	Maheux AF, Boudreau DK, Abed JY, Berube E, Brodeur S, Bernard KA, Hashimi A, Ducrey E, Guay EF, Raymond F, Corbeil J, Domingo MC, Roy PH, Boissinot M, Tocheva EI, Omar RF	Int J Syst Evol Microbiol	10.1099/ijsem.0.004691	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#57874	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47790
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Filifactor alocis (CCUG 47790, ATCC 35896)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000163895

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

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