Strain identifier

BacDive ID: 152431

Type strain: No

Species: Histophilus somni

NCBI tax ID(s): 731 (species)

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General

@ref: 57338

BacDive-ID: 152431

keywords: Bacteria, microaerophile, mesophilic

description: Histophilus somni CCUG 46771 is a microaerophile, mesophilic bacterium that was isolated from Ovine vagina,diseased animal.

NCBI tax id

  • NCBI tax id: 731
  • Matching level: species

doi: 10.13145/bacdive152431.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Histophilus
  • species: Histophilus somni
  • full scientific name: Histophilus somni Angen et al. 2003

@ref: 57338

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Histophilus

species: Histophilus somni

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57338
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57338
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine+degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase+4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57338C12:03.612
    57338C14:05.414
    57338C16:029.916
    57338C18:0318
    57338C20:00.220
    57338C16:1 ω5c0.215.908
    57338C16:1 ω7c38.515.819
    57338C18:1 ω5c0.417.919
    57338C18:1 ω7c /12t/9t9.717.824
    57338C18:1 ω9c2.517.769
    57338C18:2 ω6,9c/C18:0 ANTE4.117.724
    57338C20:1 ω7c1.519.833
    57338C20:4 ω6,9,12,15c0.219.395
    57338Unidentified0.113.933
    57338Unidentified0.215.176
    57338unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57338-----+----++--+-----

API NH

@refGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
57338+---+-----+-

Isolation, sampling and environmental information

isolation

  • @ref: 57338
  • sample type: Ovine vagina,diseased animal
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Urogenital tract#Vagina

External links

@ref: 57338

culture collection no.: CCUG 46771, MCCM 00338

straininfo link

  • @ref: 106397
  • straininfo: 54504

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57338Curators of the CCUGhttps://www.ccug.se/strain?id=46771Culture Collection University of Gothenburg (CCUG) (CCUG 46771)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
106397Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID54504.1