Strain identifier

BacDive ID: 15234

Type strain: No

Species: Streptomyces globisporus

Strain history: KCC S-0343 <-- IFO 12739 <-- SAJ <-- ISP 5136 <-- INA 273/53.

NCBI tax ID(s): 66867 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 9338

BacDive-ID: 15234

DSM-Number: 40136

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces globisporus DSM 40136 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66867
  • Matching level: species

strain history

@refhistory
9338<- KCC <- IFO <- Y. Okami, IMC <- E. B. Shirling, ISP <- T. P. Preobrazhenskaya, INA
67770KCC S-0343 <-- IFO 12739 <-- SAJ <-- ISP 5136 <-- INA 273/53.

doi: 10.13145/bacdive15234.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces globisporus
  • full scientific name: Streptomyces globisporus (Krassilnikov 1941) Waksman 1953 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Streptomyces mediolani
    20215Streptomyces griseinus
    20215Actinomyces albovinaceus
    20215Actinomyces globisporus
    20215Streptomyces albovinaceus

@ref: 9338

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces globisporus subsp. globisporus

full scientific name: Streptomyces globisporus subsp. globisporus (Krassilnikov 1941) Pridham et al. 1958

type strain: no

Morphology

multimedia

  • @ref: 9338
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40136.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9338
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18541positiveoptimum28mesophilic
9338positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1854117234glucose+
1854122599arabinose+
1854117992sucrose-
1854118222xylose-
1854117268myo-inositol-
1854129864mannitol+
1854128757fructose+
1854126546rhamnose+
1854116634raffinose-
1854162968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18541++++++++-++-+-+++++

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18541+++++-+---+

Isolation, sampling and environmental information

isolation

@refsample type
9338soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB249958
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185411German classification
93381Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albovinaceus gene for 16S rRNA, partial sequenceAB122764564ena66867
20218Streptomyces albovinaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4343D44063120ena66867
20218Streptomyces albovinaceus strain DSM 40136 16S ribosomal RNA gene, partial sequenceGU383174779ena66867
9338Streptomyces albovinaceus gene for 16S rRNA, partial sequence, strain: NBRC 12739AB2499581481ena66867
9338Streptomyces albovinaceus strain JCM 4343 16S ribosomal RNA gene, partial sequenceAY9997591441ena66867

Genome sequences

  • @ref: 67770
  • description: Streptomyces albovinaceus NRRL B-2566
  • accession: GCA_002154385
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 66867

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.936no
gram-positiveyes90.453no
anaerobicno99.169no
halophileno93.815no
spore-formingyes91.429no
thermophileno98.725yes
glucose-utilyes88.921yes
aerobicyes93.439no
motileno93.924no
glucose-fermentno88.07no

External links

@ref: 9338

culture collection no.: DSM 40136, ATCC 15823, CBS 256.66, CBS 462.68, IFO 12739, INA 273/53, ISP 5136, JCM 4343, KCC S-0343, NBRC 12739, RIA 1004, ATCC 19723, ATCC 23613, BCRC 13757, CCM 3005, CGMCC 4.1631, KCTC 19068, NCIMB 13010, NRRL B-2566, VKM Ac-572

straininfo link

  • @ref: 84331
  • straininfo: 37107

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9338Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40136)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40136
18541Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40136.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84331Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37107.1StrainInfo: A central database for resolving microbial strain identifiers