Strain identifier
BacDive ID: 15234
Type strain:
Species: Streptomyces globisporus
Strain history: KCC S-0343 <-- IFO 12739 <-- SAJ <-- ISP 5136 <-- INA 273/53.
NCBI tax ID(s): 66867 (species)
General
@ref: 9338
BacDive-ID: 15234
DSM-Number: 40136
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces globisporus DSM 40136 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 66867
- Matching level: species
strain history
@ref | history |
---|---|
9338 | <- KCC <- IFO <- Y. Okami, IMC <- E. B. Shirling, ISP <- T. P. Preobrazhenskaya, INA |
67770 | KCC S-0343 <-- IFO 12739 <-- SAJ <-- ISP 5136 <-- INA 273/53. |
doi: 10.13145/bacdive15234.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces globisporus
- full scientific name: Streptomyces globisporus (Krassilnikov 1941) Waksman 1953 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptomyces mediolani 20215 Streptomyces griseinus 20215 Actinomyces albovinaceus 20215 Actinomyces globisporus 20215 Streptomyces albovinaceus
@ref: 9338
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces globisporus subsp. globisporus
full scientific name: Streptomyces globisporus subsp. globisporus (Krassilnikov 1941) Pridham et al. 1958
type strain: no
Morphology
multimedia
- @ref: 9338
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40136.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 9338
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18541 | positive | optimum | 28 | mesophilic |
9338 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18541 | 17234 | glucose | + | |
18541 | 22599 | arabinose | + | |
18541 | 17992 | sucrose | - | |
18541 | 18222 | xylose | - | |
18541 | 17268 | myo-inositol | - | |
18541 | 29864 | mannitol | + | |
18541 | 28757 | fructose | + | |
18541 | 26546 | rhamnose | + | |
18541 | 16634 | raffinose | - | |
18541 | 62968 | cellulose | + | |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | + | 3.2.1.51 |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18541 | + | + | + | + | + | + | + | + | - | + | + | - | + | - | + | + | + | + | + |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18541 | + | + | + | + | + | - | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
9338 | soil |
67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_135.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB249958
- Sequence Identity:
- Total samples: 4030
- soil counts: 2441
- aquatic counts: 286
- animal counts: 1009
- plant counts: 294
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
18541 | 1 | German classification |
9338 | 1 | Risk group (German classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces albovinaceus gene for 16S rRNA, partial sequence | AB122764 | 564 | ena | 66867 |
20218 | Streptomyces albovinaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4343 | D44063 | 120 | ena | 66867 |
20218 | Streptomyces albovinaceus strain DSM 40136 16S ribosomal RNA gene, partial sequence | GU383174 | 779 | ena | 66867 |
9338 | Streptomyces albovinaceus gene for 16S rRNA, partial sequence, strain: NBRC 12739 | AB249958 | 1481 | ena | 66867 |
9338 | Streptomyces albovinaceus strain JCM 4343 16S ribosomal RNA gene, partial sequence | AY999759 | 1441 | ena | 66867 |
Genome sequences
- @ref: 67770
- description: Streptomyces albovinaceus NRRL B-2566
- accession: GCA_002154385
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 66867
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 97.936 | no |
gram-positive | yes | 90.453 | no |
anaerobic | no | 99.169 | no |
halophile | no | 93.815 | no |
spore-forming | yes | 91.429 | no |
thermophile | no | 98.725 | yes |
glucose-util | yes | 88.921 | yes |
aerobic | yes | 93.439 | no |
motile | no | 93.924 | no |
glucose-ferment | no | 88.07 | no |
External links
@ref: 9338
culture collection no.: DSM 40136, ATCC 15823, CBS 256.66, CBS 462.68, IFO 12739, INA 273/53, ISP 5136, JCM 4343, KCC S-0343, NBRC 12739, RIA 1004, ATCC 19723, ATCC 23613, BCRC 13757, CCM 3005, CGMCC 4.1631, KCTC 19068, NCIMB 13010, NRRL B-2566, VKM Ac-572
straininfo link
- @ref: 84331
- straininfo: 37107
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9338 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40136) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40136 | |||
18541 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40136.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
84331 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37107.1 | StrainInfo: A central database for resolving microbial strain identifiers |