Strain identifier

BacDive ID: 15214

Type strain: No

Species: Streptomyces bobili

Strain history: KCC S-0231 <-- Y. Okami (NIHJ 412) <-- ETH 18822.

NCBI tax ID(s): 33899 (species)

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General

@ref: 9574

BacDive-ID: 15214

DSM-Number: 40481

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces bobili DSM 40481 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 33899
  • Matching level: species

strain history

@refhistory
9574<- E.B. Shirling, ISP <- ATCC <- L. Ettlinger, ETH, 18822
67770KCC S-0231 <-- Y. Okami (NIHJ 412) <-- ETH 18822.

doi: 10.13145/bacdive15214.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces bobili
  • full scientific name: Streptomyces bobili (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces galilaeus
    20215Actinomyces bobili

@ref: 9574

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces bobili

full scientific name: Streptomyces bobili (Waksman and Curtis 1916) Waksman and Henrici 1948

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9574GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9574STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperaturerange
18599positiveoptimum28mesophilic
9574positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9574cinerubins A
9574cinerubins B
9574ferrimycins A1 and A2 (pilosomycins A)
9574cinerubins A, B
67770ferrimycins A and A2

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1859917234glucose+
1859922599arabinose+
1859917992sucrose+
1859918222xylose-
1859917268myo-inositol+
1859929864mannitol-
1859928757fructose+
1859926546rhamnose+
1859916634raffinose+
1859962968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770cinerubin Ayes
68368acetoinyes15688
68368indoleno35581
68368hydrogen sulfideyes16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18599+-+-++-+-++++-++++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18599+----++--++

Isolation, sampling and environmental information

isolation

  • @ref: 9574
  • sample type: soil
  • geographic location: Palestine
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185991German classification
95741Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces galilaeus strain CGMCC 4.1320 16S ribosomal RNA gene, partial sequenceEU0485421393ena33899
20218Streptomyces galilaeus gene for 16S rRNAAB0458781484ena33899
20218Streptomyces galilaeus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4757D44337120ena33899
20218Streptomyces galilaeus gene for 16S rRNA, partial sequence, strain: NBRC 13400AB1843781477ena33899

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces galilaeus ATCC 14969GCA_008704575completencbi33899
66792Streptomyces galilaeus JCM 4757GCA_014650835scaffoldncbi33899
66792Streptomyces galilaeus strain ATCC 1496933899.19completepatric33899
66792Streptomyces galilaeus strain JCM 475733899.30wgspatric33899

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.394no
flagellatedno97.845no
gram-positiveyes87.93no
anaerobicno99.198no
aerobicyes91.517no
halophileno95.341no
spore-formingyes95.219no
thermophileno98.125no
glucose-utilyes89.128yes
glucose-fermentno90.421no

External links

@ref: 9574

culture collection no.: DSM 40481, ATCC 14969, CBS 701.72, IFO 13400, ISP 5481, JCM 4231, JCM 4757, NBRC 13400, NRRL 2722, RIA 1361, ETH 18822, BCRC 11828, CCT 4839, ICMP 142, KCTC 1919, KCTC 1921, NBIMCC 1180, VKM Ac-729

straininfo link

  • @ref: 84312
  • straininfo: 39001

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24812360Streptomyces graminifolii sp. nov., isolated from bamboo (Sasa borealis) litter.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.056895-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sasa/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27298302Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0012362016Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9574Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40481)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40481
18599Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40481.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
84312Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39001.1StrainInfo: A central database for resolving microbial strain identifiers