Name: Streptomyces bobili DSM 40481
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15214

Type strain:

Species: Streptomyces bobili

Culture col. no.: DSM 40481, ATCC 14969, CBS 701.72, IFO 13400, ISP 5481, JCM 4231, JCM 4757, NBRC 13400, NRRL 2722, RIA 1361, ETH 18822, BCRC 11828, CCT 4839, ICMP 142, KCTC 1919, KCTC 1921, NBIMCC 1180, VKM Ac-729

Strain history: KCC S-0231 <-- Y. Okami (NIHJ 412) <-- ETH 18822.

NCBI tax ID(s): 33899 (species)

SI-ID 39001

ATCC 14969, DSM 40481, IFO 13400, NRRL 2722, JCM 4231, JCM 4757, CCRC 11828, CCT 4839, VKM Ac-729, NRRL B-2722, KCTC 1919, KCTC 1921, NBRC 13400, BCRC 11828, ICMP 142, NBIMCC 1180, PDDCC 142, CGMCC 4.1320, AS 4.1320, CBS 701.72

Special Collections

Other strains from Streptomyces bobili

Section

When using BacDive for research please cite our paper

Streptomyces bobili DSM 40481 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bobili**
	Full Scientific Name (LPSN)	Streptomyces bobili (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* bobili"*
	Synonym	Streptomyces galilaeus

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	positive Confidence in %98.6

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9574]	growth	28 °C
[Ref.: #18599]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %91.04
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99

[Ref.: #125439]	Ability of spore formation	yes Confidence in %90.6
[Ref.: #125438]	Ability of spore formation	yes Confidence in %91.248

[Ref.: #9574]	Name of produced compound	cinerubins A
[Ref.: #9574]	Name of produced compound	cinerubins B
[Ref.: #9574]	Name of produced compound	ferrimycins A1 and A2 (pilosomycins A)
[Ref.: #9574]	Name of produced compound	cinerubins A, B
[Ref.: #67770]	Name of produced compound	ferrimycins A and A₂

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18599]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18599]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18599]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18599]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18599]	mannitol ChEBI	-
[Ref.: #18599]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18599]	raffinose ChEBI	+
[Ref.: #18599]	rhamnose ChEBI	+
[Ref.: #18599]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18599]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	cinerubin A	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18599]	155	+	-	-	-	-	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18599]	242	not determinedn.d.	+	-	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9574]	Sample type/isolated from	soil
[Ref.: #9574]	Geographic location (country and/or sea, region)	Palestine
[Ref.: #9574]	Country	USA
[Ref.: #9574]	Country ISO 3 Code	USA
[Ref.: #9574]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18599]	Biosafety level	1	German classification
[Ref.: #9574]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces galilaeus strain CGMCC 4.1320 16S ribosomal RNA gene, partial sequence	EU048542	1393	GenBank ENA	33899 tax ID	*
[Ref.: #20218]	Streptomyces galilaeus gene for 16S rRNA	AB045878	1484	GenBank ENA	33899 tax ID	*
[Ref.: #20218]	Streptomyces galilaeus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4757	D44337	120	GenBank ENA	33899 tax ID	*
[Ref.: #20218]	Streptomyces galilaeus gene for 16S rRNA, partial sequence, strain: NBRC 13400	AB184378	1477	GenBank ENA	33899 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces galilaeus ATCC 14969	GCA_008704575	complete	GenBank ENA	33899 tax ID	*
[Ref.: #66792]	Streptomyces galilaeus JCM 4757	GCA_014650835	scaffold	GenBank ENA	33899 tax ID	*
[Ref.: #66792]	Streptomyces galilaeus strain ATCC 14969	33899.19	complete	PATRIC	33899 tax ID	*
[Ref.: #66792]	Streptomyces galilaeus strain JCM 4757	33899.30	wgs	PATRIC	33899 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces galilaeus ATCC 14969 NCBI: GCA_008704575.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	89.834	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.617	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	91.04	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	91.248	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.944	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces galilaeus strain ATCC 14969 PATRIC: 33899.19
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	90.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	89.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	98.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99

Availability in culture collections External links

[Ref.: #9574]

Culture collection no.

DSM 40481, ATCC 14969, CBS 701.72, IFO 13400, ISP 5481, JCM 4231, JCM 4757, NBRC 13400, NRRL 2722, RIA 1361, ETH 18822, BCRC 11828, CCT 4839, ICMP 142, KCTC 1919, KCTC 1921, NBIMCC 1180, VKM Ac-729

[Ref.: #84312]

SI-ID 39001

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces graminifolii sp. nov., isolated from bamboo (Sasa borealis) litter.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.056895-0	2014	*
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016	*

References

#9574

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40481

#18599

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#84312

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39001.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Streptomyces galilaeus ATCC 14969

Streptomyces galilaeus strain ATCC 14969

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