Strain identifier

BacDive ID: 151891

Type strain: No

Species: Burkholderia ambifaria

NCBI tax ID(s): 152480 (species)

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General

@ref: 56655

BacDive-ID: 151891

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Burkholderia ambifaria CCUG 45121 is an aerobe, mesophilic bacterium that was isolated from Human sputum ?,cystic fibrosis.

NCBI tax id

  • NCBI tax id: 152480
  • Matching level: species

doi: 10.13145/bacdive151891.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia ambifaria
  • full scientific name: Burkholderia ambifaria Coenye et al. 2001

@ref: 56655

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia ambifaria

type strain: no

Culture and growth conditions

culture temp

  • @ref: 56655
  • growth: positive
  • type: growth
  • temperature: 30-37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56655
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56655C12:01.112
    56655C14:04.714
    56655C15:0115
    56655C16:022.716
    56655C14:0 3OH/C16:1 ISO I6.515.485
    56655C15:1 ω6c0.514.856
    56655C16:0 2OH1.317.233
    56655C16:0 3OH5.117.52
    56655C16:1 2OH217.047
    56655C16:1 ω5c115.908
    56655C16:1 ω7c15.315.819
    56655C17:0 CYCLO18.916.888
    56655C18:1 2OH3.619.088
    56655C18:1 ω7c /12t/9t13.917.824
    56655C19:0 CYCLO ω8c2.518.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
56655-+++-+----++-----+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
56655+-+---+++++++-+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 56655
  • sample type: Human sputum ?,cystic fibrosis
  • country: Australia
  • origin.country: AUS
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum
#Infection#Disease#Cystic fibrosis
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia ambifaria CEP0996 pc3-nullGCA_026683795chromosomencbi152480
66792Burkholderia ambifaria CEP0996GCA_026683835chromosomencbi152480

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.852no
flagellatedno74.041no
gram-positiveno97.982no
anaerobicno98.582yes
aerobicyes88.561yes
halophileno93.699no
spore-formingno93.637no
glucose-fermentno81.98yes
thermophileno99.34yes
glucose-utilyes91.522no

External links

@ref: 56655

culture collection no.: CCUG 45121, CEP 0996, LMG 19467

straininfo link

  • @ref: 105942
  • straininfo: 13236

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
56655Curators of the CCUGhttps://www.ccug.se/strain?id=45121Culture Collection University of Gothenburg (CCUG) (CCUG 45121)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
105942Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13236.1