Strain identifier

BacDive ID: 15152

Type strain: Yes

Species: Streptomyces finlayi

Strain Designation: R-1-30

Strain history: KCC S-0216 <-- I. Szabó R-1-30.

NCBI tax ID(s): 67296 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9275

BacDive-ID: 15152

DSM-Number: 40218

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces finlayi R-1-30 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67296
  • Matching level: species

strain history

@refhistory
9275<- E.B. Shirling, ISP <- I. Szabó, R-1-30
67770KCC S-0216 <-- I. Szabó R-1-30.

doi: 10.13145/bacdive15152.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces finlayi
  • full scientific name: Streptomyces finlayi (Szabó et al. 1963) Pridham 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces finlayi

@ref: 9275

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces finlayi

full scientific name: Streptomyces finlayi (Szabó et al. 1963) Pridham 1970

strain designation: R-1-30

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 9275
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18560positiveoptimum28mesophilic
9275positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 18560
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1856017234glucose+
1856022599arabinose+
1856017992sucrose-
1856018222xylose-
1856017268myo-inositol-
1856029864mannitol+
1856028757fructose+
1856026546rhamnose-
1856016634raffinose-
1856062968cellulose-
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18560-----------

Isolation, sampling and environmental information

isolation

  • @ref: 9275
  • sample type: soil
  • country: USSR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: JQ924392
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185601German classification
92751Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces finlayi strain CGMCC 4.1436 clone 1 16S ribosomal RNA gene, complete sequenceJQ9243901479ena67296
20218Streptomyces finlayi strain CGMCC 4.1436 clone 2 16S ribosomal RNA gene, complete sequenceJQ9243911479ena67296
20218Streptomyces finlayi strain CGMCC 4.1436 clone 4 16S ribosomal RNA gene, complete sequenceJQ9243921479ena67296
20218Streptomyces finlayi gene for 16S ribosomal RNA, partial sequence, strain: JCM 4637D44279120ena67296
20218Streptomyces finlayi gene for 16S rRNA, partial sequence, strain: NBRC 13201AB1843301456ena67296
20218Streptomyces finlayi strain NRRL B-12114 16S ribosomal RNA gene, partial sequenceAY9997881494ena67296

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces finlayi JCM 4637GCA_014650515scaffoldncbi67296
66792Streptomyces finlayi strain JCM 463767296.4wgspatric67296

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.6no
gram-positiveyes89.964no
anaerobicno99.18no
aerobicyes93.319no
halophileno92.952no
spore-formingyes94.292no
glucose-utilyes88.554no
thermophileno99.655yes
motileno93.152no
glucose-fermentno85.313no

External links

@ref: 9275

culture collection no.: DSM 40218, ATCC 23340, CBS 802.68, IFO 13201, ISP 5218, NBRC 13201, RIA 1162, JCM 4216, ATCC 23906, BCRC 13796, CGMCC 4.1436, HAMBI 1071, JCM 4637, NCIMB 9834, NRRL B-12114, VKM Ac-967

straininfo link

  • @ref: 84256
  • straininfo: 13369

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9275Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40218)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40218
18560Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40218.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84256Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13369.1StrainInfo: A central database for resolving microbial strain identifiers