Name: Streptomyces finlayi R-1-30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15152

Type strain:

Species: Streptomyces finlayi

Strain Designation: R-1-30

Culture col. no.: DSM 40218, ATCC 23340, CBS 802.68, IFO 13201, ISP 5218, NBRC 13201, RIA 1162, JCM 4216, ATCC 23906, BCRC 13796, CGMCC 4.1436, HAMBI 1071, JCM 4637, NCIMB 9834, NRRL B-12114, VKM Ac-967

Strain history: KCC S-0216 <-- I. Szabó R-1-30.

NCBI tax ID(s): 67296 (species)

SI-ID 13369

LMG 19373, ATCC 23340, ATCC 23906, DSM 40218, IFO 13201, JCM 4216, JCM 4637, NCIMB 9834, NRRL B-12114, VKM Ac-967, NCIB 9834, CBS 802.68, AS 4.1436, NBRC 13201, HAMBI 1071, BCRC 13796, CCRC 13796, CGMCC 4.1436

Other strains from Streptomyces finlayi

S. finlayi III/1x, DSM 46473, IMET 43310
S. finlayi BCRU MITI 15, DSM 42162

Section

Streptomyces finlayi R-1-30 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces finlayi**
	Full Scientific Name (LPSN)	Streptomyces finlayi (Szabó et al. 1963) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces finlayi"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9275]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9275]

Culture medium growth

[Ref.: #9275]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9275]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9275]	growth	28 °C
[Ref.: #18560]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9275]	Temperature range	mesophilic
[Ref.: #18560]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18560]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18560]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18560]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18560]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18560]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18560]	mannitol ChEBI	+
[Ref.: #18560]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18560]	raffinose ChEBI	-
[Ref.: #18560]	rhamnose ChEBI	-
[Ref.: #18560]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18560]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18560]	119	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9275]	Sample type/isolated from	soil
[Ref.: #9275]	Country	USSR
[Ref.: #9275]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ924392 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18560]	Biosafety level	1	German classification
[Ref.: #9275]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces finlayi strain CGMCC 4.1436 clone 1 16S ribosomal RNA gene, complete sequence	JQ924390	1479	ENA	67296 tax ID	*
[Ref.: #20218]	Streptomyces finlayi strain CGMCC 4.1436 clone 2 16S ribosomal RNA gene, complete sequence	JQ924391	1479	ENA	67296 tax ID	*
[Ref.: #20218]	Streptomyces finlayi strain CGMCC 4.1436 clone 4 16S ribosomal RNA gene, complete sequence	JQ924392	1479	ENA	67296 tax ID	*
[Ref.: #20218]	Streptomyces finlayi gene for 16S ribosomal RNA, partial sequence, strain: JCM 4637	D44279	120	ENA	67296 tax ID	*
[Ref.: #20218]	Streptomyces finlayi gene for 16S rRNA, partial sequence, strain: NBRC 13201	AB184330	1456	ENA	67296 tax ID	*
[Ref.: #20218]	Streptomyces finlayi strain NRRL B-12114 16S ribosomal RNA gene, partial sequence	AY999788	1494	ENA	67296 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces finlayi JCM 4637	GCA_014650515	scaffold	GenBank	67296 tax ID	*
[Ref.: #66792]	Streptomyces finlayi strain JCM 4637	67296.4	wgs	PATRIC	67296 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces finlayi JCM 4637 NCBI: GCA_014650515.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces finlayi JCM 4637 NCBI: GCA_014650515.1
[Ref.: #69480]	flagellated	no	97.6	no
[Ref.: #69480]	gram-positive	yes	89.964	no
[Ref.: #69480]	anaerobic	no	99.18	no
[Ref.: #69480]	aerobic	yes	93.319	no
[Ref.: #69480]	halophile	no	92.952	no
[Ref.: #69480]	spore-forming	yes	94.292	no
[Ref.: #69480]	glucose-util	yes	88.554	no
[Ref.: #69480]	thermophile	no	99.655	yes
[Ref.: #69480]	motile	no	93.152	no
[Ref.: #69480]	glucose-ferment	no	85.313	no

Availability in culture collections External links

[Ref.: #9275]

Culture collection no.

DSM 40218, ATCC 23340, CBS 802.68, IFO 13201, ISP 5218, NBRC 13201, RIA 1162, JCM 4216, ATCC 23906, BCRC 13796, CGMCC 4.1436, HAMBI 1071, JCM 4637, NCIMB 9834, NRRL B-12114, VKM Ac-967

[Ref.: #84256]

SI-ID 13369

References

#9275

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40218

#18560

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84256

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13369.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces finlayi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces finlayi JCM 4637

Streptomyces finlayi JCM 4637

Change proposal

Change proposal