Strain identifier
BacDive ID: 15072
Type strain: 
Species: Streptomyces cavourensis
Strain Designation: 829
Strain history: KCC S-0249 <-- NRRL 2740.
NCBI tax ID(s): 67258 (species)
version 8.1 (current version)
General
@ref: 9442
BacDive-ID: 15072
DSM-Number: 40300
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, antibiotic compound production
description: Streptomyces cavourensis 829 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 67258
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9442 | <- E.B. Shirling, ISP <- D. Giolitti, 829 |
| 67770 | KCC S-0249 <-- NRRL 2740. |
doi: 10.13145/bacdive15072.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces cavourensis
- full scientific name: Streptomyces cavourensis Skarbek and Brady 1978 (Approved Lists 1980)
@ref: 9442
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces cavourensis subsp. cavourensis
full scientific name: Streptomyces cavourensis subsp. cavourensis Skarbek and Brady 1978
strain designation: 829
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9442 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9442 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9442 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
compound production
- @ref: 9442
- compound: flavensomycin
metabolite production
- @ref: 67770
- metabolite: flavensomycin
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 9442
- sample type: soil
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_210.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_210&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184264
- Sequence Identity:
- Total samples: 112
- soil counts: 103
- aquatic counts: 1
- animal counts: 6
- plant counts: 2
Safety information
risk assessment
- @ref: 9442
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces cavourensis subsp. cavourensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4555 | D44228 | 120 | ena | 67259 |
| 20218 | Streptomyces cavourensis subsp. cavourensis gene for 16S rRNA, partial sequence, strain: NBRC 13026 | AB184264 | 1479 | ena | 67259 |
| 20218 | Streptomyces cavourensis subsp. cavourensis strain NRRL 2740 16S ribosomal RNA gene, partial sequence | DQ445791 | 1501 | ena | 67259 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces cavourensis DSM 41795 | GCA_006788935 | contig | ncbi | 67258 |
| 66792 | Streptomyces cavourensis JCM 4298 | GCA_014649215 | scaffold | ncbi | 67258 |
| 66792 | Streptomyces cavourensis strain DSM 41795 | 67258.6 | wgs | patric | 67258 |
| 66792 | Streptomyces cavourensis strain JCM 4298 | 67258.8 | wgs | patric | 67258 |
| 66792 | Streptomyces cavourensis DSM 41795 | 2818991473 | draft | img | 67258 |
GC content
- @ref: 67770
- GC-content: 72
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 97.67 | no |
| gram-positive | yes | 90.279 | no |
| anaerobic | no | 99.042 | no |
| aerobic | yes | 91.823 | no |
| halophile | no | 92.782 | no |
| spore-forming | yes | 95.069 | no |
| glucose-util | yes | 89.152 | no |
| thermophile | no | 99.049 | yes |
| motile | no | 94.563 | no |
| glucose-ferment | no | 88.374 | no |
External links
@ref: 9442
culture collection no.: DSM 40300, ATCC 14889, CBS 669.69, DSM 41795, IFO 13026, ISP 5300, JCM 4249, NBRC 13026, NCIB 8918, RIA 1218, ATCC 25438, CGMCC 4.1692, JCM 4298, JCM 4555, KCCM 40666, NCIMB 8918, NRRL 2740, VKM Ac-731, VTT E-991425
straininfo link
- @ref: 84178
- straininfo: 45571
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19060058 | Taxonomic study of a chromomycin-producing strain and reclassification of Streptomyces cavourensis subsp. washingtonensis as a later synonym of Streptomyces griseus. | Wu X, Wen Y, Qian C, Li O, Fang H, Chen W | Int J Syst Evol Microbiol | 10.1099/ijs.0.65628-0 | 2008 | Chromomycins/*metabolism, Classification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Streptomyces/chemistry/*classification/genetics/*physiology, Streptomyces griseus/chemistry/*classification/genetics/*physiology | Genetics |
| Phylogeny | 23504246 | Streptomyces araujoniae sp. nov.: an actinomycete isolated from a potato tubercle. | da Silva LJ, Taketani RG, de Melo IS, Goodfellow M, Zucchi TD | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9901-9 | 2013 | Antibiosis, Aspergillus/growth & development, Bacterial Typing Techniques, Base Sequence, DNA, Bacterial/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Solanum tuberosum/*microbiology, Streptomyces/*classification/genetics/*isolation & purification | Genetics |
| Phylogeny | 29869093 | Antimicrobial and Cytotoxic Properties of Bioactive Metabolites Produced by Streptomyces cavourensis YBQ59 Isolated from Cinnamomum cassia Prels in Yen Bai Province of Vietnam. | Vu HT, Nguyen DT, Nguyen HQ, Chu HH, Chu SK, Chau MV, Phi QT | Curr Microbiol | 10.1007/s00284-018-1517-x | 2018 | Anti-Bacterial Agents/chemistry/metabolism/*pharmacology, Cell Line, Tumor, Cell Survival/drug effects, Cinnamomum aromaticum/*microbiology, Humans, Methicillin-Resistant Staphylococcus aureus/drug effects/growth & development, Microbial Sensitivity Tests, Phylogeny, Streptomyces/*chemistry/classification/genetics/*isolation & purification, Vietnam | Pathogenicity |
| Genetics | 30240023 | Complete genome sequence of soil actinobacteria Streptomyces cavourensis TJ430. | Wang P, Liu Z, Huang Y | J Basic Microbiol | 10.1002/jobm.201800181 | 2018 | Base Composition, Base Sequence, China, Drug Resistance, Bacterial/genetics, Genes, Bacterial, Genome Size, Genome, Bacterial/*genetics, Genomic Islands, Molecular Sequence Annotation, Phylogeny, Plasmids/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/classification/*genetics | Phylogeny |
| Phylogeny | 31188092 | Streptomyces rhizosphaericola sp. nov., an actinobacterium isolated from the wheat rhizosphere. | Vargas Hoyos HA, Nobre Santos S, Da Silva LJ, Paulino Silva FS, Bonaldo Genuario D, Domingues Zucchi T, Melo IS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003498 | 2019 | Bacterial Typing Techniques, Base Composition, Brazil, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Multilocus Sequence Typing, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Triticum/*microbiology | Transcriptome |
| Enzymology | 32109569 | Purification and characterization of seven bioactive compounds from the newly isolated Streptomyces cavourensis TN638 strain via solid-state fermentation. | Kaaniche F, Hamed A, Elleuch L, Chakchouk-Mtibaa A, Smaoui S, Karray-Rebai I, Koubaa I, Arcile G, Allouche N, Mellouli L | Microb Pathog | 10.1016/j.micpath.2020.104106 | 2020 | ||
| Phylogeny | 32756615 | A sensitive pH indicator-based spectrophotometric assay for PHB depolymerase activity on microtiter plates. | Camacho-Ruiz MA, Muller-Santos M, Hernandez-Mancillas XD, Armenta-Perez VP, Zamora-Gonzalez E, Rodriguez JA | Anal Methods | 10.1039/d0ay00840k | 2020 | Amino Acid Sequence, Burkholderiaceae, Hydrogen-Ion Concentration, *Hydroxybutyrates, *Polyesters, RNA, Ribosomal, 16S, Streptomyces |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9442 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40300) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40300 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84178 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45571.1 | StrainInfo: A central database for resolving microbial strain identifiers |