Name: Streptomyces cavourensis 829
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15072

Type strain:

Species: Streptomyces cavourensis

Strain Designation: 829

Culture col. no.: DSM 40300, ATCC 14889, CBS 669.69, DSM 41795, IFO 13026, ISP 5300, JCM 4249, NBRC 13026, NCIB 8918, RIA 1218, ATCC 25438, CGMCC 4.1692, JCM 4298, JCM 4555, KCCM 40666, NCIMB 8918, NRRL 2740, VKM Ac-731, VTT E-991425

Strain history: KCC S-0249 <-- NRRL 2740.

NCBI tax ID(s): 67258 (species)

SI-ID 45571

ATCC 14889, ATCC 25438, IFO 13026, IMI 70582, JCM 4249, NCIB 8918, NRRL 2740, DSM 40300, NCIMB 8918, VKM Ac-731, JCM 4298, JCM 4555, IMI 70852, CBS 669.69, AS 4.1692, NBRC 13026, DSM 41795, BCRC 15135, CCRC 15135, CGMCC 4.1692, VTT E-991425

Section

Streptomyces cavourensis 829 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces cavourensis**
	Full Scientific Name (LPSN)	Streptomyces cavourensis Skarbek and Brady 1978 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9442]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9442]

Culture medium growth

[Ref.: #9442]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9442]

Culture medium composition

expand / minimize

[Ref.: #9442]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9442]

Culture medium growth

[Ref.: #9442]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9442]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9442]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9442]

Name of produced compound

flavensomycin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		flavensomycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9442]	Sample type/isolated from	soil
[Ref.: #9442]	Country	Italy
[Ref.: #9442]	Country ISO 3 Code	ITA
[Ref.: #9442]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184264 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	103
Animal Samples	6
Plant Samples	2
Total Samples	112

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9442]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces cavourensis subsp. cavourensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4555	D44228	120	ENA	67259 tax ID	*
[Ref.: #20218]	Streptomyces cavourensis subsp. cavourensis gene for 16S rRNA, partial sequence, strain: NBRC 13026	AB184264	1479	ENA	67259 tax ID	*
[Ref.: #20218]	Streptomyces cavourensis subsp. cavourensis strain NRRL 2740 16S ribosomal RNA gene, partial sequence	DQ445791	1501	ENA	67259 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces cavourensis DSM 41795	GCA_006788935	contig	GenBank	67258 tax ID	*
[Ref.: #66792]	Streptomyces cavourensis JCM 4298	GCA_014649215	scaffold	GenBank	67258 tax ID	*
[Ref.: #66792]	Streptomyces cavourensis strain DSM 41795	67258.6	wgs	PATRIC	67258 tax ID	*
[Ref.: #66792]	Streptomyces cavourensis strain JCM 4298	67258.8	wgs	PATRIC	67258 tax ID	*
[Ref.: #66792]	Streptomyces cavourensis DSM 41795	2818991473	draft	JGI IMG/M	67258 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces cavourensis strain JCM 4298 PATRIC: 67258.8
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces cavourensis JCM 4298 NCBI: GCA_014649215.1
[Ref.: #69480]	flagellated	no	97.67	no
[Ref.: #69480]	gram-positive	yes	90.279	no
[Ref.: #69480]	anaerobic	no	99.042	no
[Ref.: #69480]	aerobic	yes	91.823	no
[Ref.: #69480]	halophile	no	92.782	no
[Ref.: #69480]	spore-forming	yes	95.069	no
[Ref.: #69480]	glucose-util	yes	89.152	no
[Ref.: #69480]	thermophile	no	99.049	yes
[Ref.: #69480]	motile	no	94.563	no
[Ref.: #69480]	glucose-ferment	no	88.374	no

Availability in culture collections External links

[Ref.: #9442]

Culture collection no.

DSM 40300, ATCC 14889, CBS 669.69, DSM 41795, IFO 13026, ISP 5300, JCM 4249, NBRC 13026, NCIB 8918, RIA 1218, ATCC 25438, CGMCC 4.1692, JCM 4298, JCM 4555, KCCM 40666, NCIMB 8918, NRRL 2740, VKM Ac-731, VTT E-991425

[Ref.: #84178]

SI-ID 45571

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A sensitive pH indicator-based spectrophotometric assay for PHB depolymerase activity on microtiter plates.	Camacho-Ruiz MA, Muller-Santos M, Hernandez-Mancillas XD, Armenta-Perez VP, Zamora-Gonzalez E, Rodriguez JA	Anal Methods	10.1039/d0ay00840k	2020	*
Enzymology	Purification and characterization of seven bioactive compounds from the newly isolated Streptomyces cavourensis TN638 strain via solid-state fermentation.	Kaaniche F, Hamed A, Elleuch L, Chakchouk-Mtibaa A, Smaoui S, Karray-Rebai I, Koubaa I, Arcile G, Allouche N, Mellouli L	Microb Pathog	10.1016/j.micpath.2020.104106	2020	*
Phylogeny	Antimicrobial and Cytotoxic Properties of Bioactive Metabolites Produced by Streptomyces cavourensis YBQ59 Isolated from Cinnamomum cassia Prels in Yen Bai Province of Vietnam.	Vu HT, Nguyen DT, Nguyen HQ, Chu HH, Chu SK, Chau MV, Phi QT	Curr Microbiol	10.1007/s00284-018-1517-x	2018	*
Phylogeny	Streptomyces rhizosphaericola sp. nov., an actinobacterium isolated from the wheat rhizosphere.	Vargas Hoyos HA, Nobre Santos S, Da Silva LJ, Paulino Silva FS, Bonaldo Genuario D, Domingues Zucchi T, Melo IS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003498	2019	*
Genetics	Complete genome sequence of soil actinobacteria Streptomyces cavourensis TJ430.	Wang P, Liu Z, Huang Y	J Basic Microbiol	10.1002/jobm.201800181	2018	*
Phylogeny	Streptomyces araujoniae sp. nov.: an actinomycete isolated from a potato tubercle.	da Silva LJ, Taketani RG, de Melo IS, Goodfellow M, Zucchi TD	Antonie Van Leeuwenhoek	10.1007/s10482-013-9901-9	2013	*
Phylogeny	Taxonomic study of a chromomycin-producing strain and reclassification of Streptomyces cavourensis subsp. washingtonensis as a later synonym of Streptomyces griseus.	Wu X, Wen Y, Qian C, Li O, Fang H, Chen W	Int J Syst Evol Microbiol	10.1099/ijs.0.65628-0	2008	*

References

#9442

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84178

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45571.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces cavourensis strain JCM 4298

Streptomyces cavourensis JCM 4298

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