Strain identifier

BacDive ID: 15064

Type strain: Yes

Species: Streptomyces canarius

Strain history: KCC S-0549 <-- NRRL 2976.

NCBI tax ID(s): 285453 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9617

BacDive-ID: 15064

DSM-Number: 40528

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces canarius DSM 40528 is a spore-forming, mesophilic bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 285453
  • Matching level: species

strain history

@refhistory
9617<- E.B. Shirling, ISP <- NRRL <- A. Dietz, Upjohn Co., UC 2591
67770KCC S-0549 <-- NRRL 2976.

doi: 10.13145/bacdive15064.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces canarius
  • full scientific name: Streptomyces canarius Vavra and Dietz 1965 (Approved Lists 1980)

@ref: 9617

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces canarius

full scientific name: Streptomyces canarius Vavra and Dietz 1965

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.964
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9617GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9617ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9617positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9617canarius (U-13, 714)
20216Canarius (U-13,714)

metabolite production

  • @ref: 67770
  • metabolite: canarius
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil

Safety information

risk assessment

  • @ref: 9617
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces canarius gene for 16S rRNA, partial sequence, strain: NBRC 13431AB1843961477ena285453
20218Streptomyces canarius strain NRRL 2976 16S ribosomal RNA gene, partial sequenceAY9999061318ena285453

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces canarius JCM 4733GCA_014650735scaffoldncbi285453
66792Streptomyces canarius strain JCM 4733285453.3wgspatric285453

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.976no
gram-positiveyes89.217no
anaerobicno99.069no
aerobicyes93.153no
halophileno94.059no
spore-formingyes95.547no
thermophileno98.438no
glucose-utilyes87.451no
motileno94.141no
glucose-fermentno89.856no

External links

@ref: 9617

culture collection no.: DSM 40528, ATCC 27423, CBS 732.72, IFO 13431, ISP 5528, NBRC 13431, NRRL 2976, RIA 1392, UC 2591, JCM 4549, BCRC 11621, CGMCC 4.1581, HAMBI 1014, IMET 43539, JCM 4733, NCIMB 9468

straininfo link

  • @ref: 84170
  • straininfo: 36145

literature

  • topic: Phylogeny
  • Pubmed-ID: 30816228
  • title: Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Malaysia with antioxidative potential.
  • authors: Law JW, Ser HL, Ab Mutalib NS, Saokaew S, Duangjai A, Khan TM, Chan KG, Goh BH, Lee LH
  • journal: Sci Rep
  • DOI: 10.1038/s41598-019-39592-6
  • year: 2019
  • mesh: Antineoplastic Agents/isolation & purification/metabolism/*pharmacology, Antioxidants/isolation & purification/metabolism/*pharmacology, Bacterial Typing Techniques, Base Composition, Cell Survival/drug effects, DNA, Bacterial/isolation & purification, HCT116 Cells, Humans, Malaysia, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/genetics/isolation & purification/*metabolism, Superoxides/antagonists & inhibitors
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9617Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40528)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40528
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84170Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36145.1StrainInfo: A central database for resolving microbial strain identifiers