Strain identifier
BacDive ID: 15064
Type strain: 
Species: Streptomyces canarius
Strain history: KCC S-0549 <-- NRRL 2976.
NCBI tax ID(s): 285453 (species)
version 9.1 (current version)
General
@ref: 9617
BacDive-ID: 15064
DSM-Number: 40528
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Streptomyces canarius DSM 40528 is a spore-forming bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 285453
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9617 | <- E.B. Shirling, ISP <- NRRL <- A. Dietz, Upjohn Co., UC 2591 |
| 67770 | KCC S-0549 <-- NRRL 2976. |
doi: 10.13145/bacdive15064.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces canarius
- full scientific name: Streptomyces canarius Vavra and Dietz 1965 (Approved Lists 1980)
@ref: 9617
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces canarius
full scientific name: Streptomyces canarius Vavra and Dietz 1965
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9617 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9617 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9617 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 92.184
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 91.496 |
| 69481 | yes | 100 |
compound production
| @ref | compound |
|---|---|
| 9617 | canarius (U-13, 714) |
| 20216 | Canarius (U-13,714) |
metabolite production
- @ref: 67770
- metabolite: canarius
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
Safety information
risk assessment
- @ref: 9617
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces canarius gene for 16S rRNA, partial sequence, strain: NBRC 13431 | AB184396 | 1477 | nuccore | 285453 |
| 20218 | Streptomyces canarius strain NRRL 2976 16S ribosomal RNA gene, partial sequence | AY999906 | 1318 | nuccore | 285453 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces canarius JCM 4733 | GCA_014650735 | scaffold | ncbi | 285453 |
| 66792 | Streptomyces canarius strain JCM 4733 | 285453.3 | wgs | patric | 285453 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.025 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.574 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 92.184 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.496 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88 | no |
External links
@ref: 9617
culture collection no.: DSM 40528, ATCC 27423, CBS 732.72, IFO 13431, ISP 5528, NBRC 13431, NRRL 2976, RIA 1392, UC 2591, JCM 4549, BCRC 11621, CGMCC 4.1581, HAMBI 1014, IMET 43539, JCM 4733, NCIMB 9468
straininfo link
- @ref: 84170
- straininfo: 36145
literature
- topic: Phylogeny
- Pubmed-ID: 30816228
- title: Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Malaysia with antioxidative potential.
- authors: Law JW, Ser HL, Ab Mutalib NS, Saokaew S, Duangjai A, Khan TM, Chan KG, Goh BH, Lee LH
- journal: Sci Rep
- DOI: 10.1038/s41598-019-39592-6
- year: 2019
- mesh: Antineoplastic Agents/isolation & purification/metabolism/*pharmacology, Antioxidants/isolation & purification/metabolism/*pharmacology, Bacterial Typing Techniques, Base Composition, Cell Survival/drug effects, DNA, Bacterial/isolation & purification, HCT116 Cells, Humans, Malaysia, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/genetics/isolation & purification/*metabolism, Superoxides/antagonists & inhibitors
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9617 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40528) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40528 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84170 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36145.1 | StrainInfo: A central database for resolving microbial strain identifiers |