Strain identifier

BacDive ID: 14993

Type strain: No

Species: Streptomyces anulatus

Strain Designation: FBUA 431, Schön. 192

Strain history: KCC S-0355 <-- IFO 12755 <-- SAJ <-- ISP 5128 <-- P. Wilde Schön 192.

NCBI tax ID(s): 1892 (species)

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General

@ref: 9331

BacDive-ID: 14993

DSM-Number: 40128

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, antibiotic compound production

description: Streptomyces anulatus FBUA 431 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 1892
  • Matching level: species

strain history

@refhistory
9331<- E.B. Shirling, ISP <- P. Wilde, Schön 192
67770KCC S-0296 <-- ATCC 11523 <-- S. A. Waksman IMRU 3657.
67770KCC S-0355 <-- IFO 12755 <-- SAJ <-- ISP 5128 <-- P. Wilde Schön 192.

doi: 10.13145/bacdive14993.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces anulatus
  • full scientific name: Streptomyces anulatus (Beijerinck 1912) Waksman 1953 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces fluorescens
    20215Streptomyces chrysomallus
    20215Actinomyces fluorescens
    20215Streptomyces citreofluorescens
    20215Actinomyces praecox
    20215Actinomyces citreofluorescens
    20215Streptomyces praecox

@ref: 9331

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces anulatus

full scientific name: Streptomyces anulatus (Beijerinck 1912) Waksman 1953 emend. Lanoot et al. 2005

strain designation: FBUA 431, Schön. 192

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 91.429

colony morphology

@refcolony colormedium used
69215Golden yellow (1004)ISP 3
69215Brown beige (1011)suter without tyrosine
69215Honey yellow (1005)ISP 5
69215Honey yellow (1005)ISP 6
69215Honey yellow (1005)ISP 7
69215Honey yellow (1005)suter with tyrosine
69215Sand yellow (1002)ISP 2
69215Sand yellow (1002)ISP 4

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69215yesAerial myceliumSilk grey (7044)ISP 7
69215noAerial myceliumISP 6
69215noAerial myceliumISP 5
69215noAerial myceliumISP 4
69215yesAerial myceliumOyster white (1013)ISP 3
69215noAerial myceliumsuter without tyrosine
69215noAerial myceliumsuter with tyrosine
69215noAerial myceliumISP 2

pigmentation

@refproductionnamecolor
69215yesMelanin
69215yessoluble pigmentGolden yellow (1004), lemon yellow (1012), honey yellow (1005), ochre brown (8001)

multimedia

@refmultimedia contentcaptionintellectual property rights
9331https://www.dsmz.de/microorganisms/photos/DSM_40128.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69215DSM_40128_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69215DSM_40128_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 9331
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
9331positivegrowth28
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: aerobe
  • confidence: 90.002

spore formation

@refspore formationconfidence
69480yes93.565
69481yes99

compound production

@refcompound
9331actinomycin C
20216Actinomycin C (perlimycin

halophily

  • @ref: 69215
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6921522599arabinose+growth
6921562968cellulose-growth
6921528757fructose+growth
6921517234glucose+growth
6921517268inositol-growth
6921537684mannose+growth
6921516634raffinose-growth
6921526546rhamnose+growth
6921517992sucrose-growth
6921518222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 67770
  • metabolite: actinomycin C
  • production: yes

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69215+--+-++-+-++/--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69215++++/-+++/-+/-+++-+-++/-+/---

Isolation, sampling and environmental information

isolation

  • @ref: 9331
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184120
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

  • @ref: 9331
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces anulatus gene for 16S rRNA, partial sequence, strain: NBRC 12755AB1841201474nuccore1892
20218Streptomyces anulatus strain DSM 40128 16S ribosomal RNA gene, partial sequenceAY9998381420nuccore1892
69215Streptomyces anulatus strain JCM 4721 16S ribosomal RNA gene, partial sequenceMT760599nuccore
124043Streptomyces anulatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4296.D44046120nuccore1892
124043Streptomyces anulatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4355.D44073120nuccore1892

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces anulatus ATCC 11523GCA_001434355chromosomencbi1892
66792Streptomyces anulatus strain ATCC 115231892.14plasmidpatric1892
66792Streptomyces anulatus strain ATCC 115231892.7completepatric1892
66792Streptomyces anulatus ATCC 11523651717145draftimg1892
66792Streptomyces anulatus ATCC 11523651716874draftimg1892
66792Streptomyces anulatus ATCC 115232873289101completeimg1892

GC content

@refGC-contentmethod
6777071high performance liquid chromatography (HPLC)
6777072fluorimetric

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes99no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.429no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no92.396no
69480spore-formingspore-formingAbility to form endo- or exosporesyes93.565no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.002no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.491no
69480flagellatedmotile2+Ability to perform flagellated movementno87.5no

External links

@ref: 9331

culture collection no.: DSM 40128, AS 4.1676, ATCC 23209, CBS 478.68, ETH 12398, IFO 12755, IMRU 3657, ISP 5128, KCC S-0297, KCC S-0355, NBRC 12755, RIA 1020, JCM 4296, JCM 4355, MTCC 1535, VKM Ac-721, ATCC 11523, IMET 41360, NRRL 2250, LMG 20459

straininfo link

  • @ref: 84101
  • straininfo: 92795

literature

  • Pubmed-ID: 28435299
  • title: Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C.
  • authors: Crnovcic I, Ruckert C, Semsary S, Lang M, Kalinowski J, Keller U
  • journal: Adv Appl Bioinform Chem
  • DOI: 10.2147/AABC.S117707
  • year: 2017

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9331Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40128)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40128
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69215Wink, J.https://cdn.dsmz.de/wink/DSM%2040128.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84101Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92795.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy