Strain identifier

BacDive ID: 14969

Type strain: No

Species: Streptomyces albus

Strain history: KCC S-0451 <-- IFO 13015 <-- SAJ <-- ISP 5447 <-- ATCC 618 <-- S. A. Waksman <-- A. J. Kluyver <-- A. Krainsky.

NCBI tax ID(s): 1888 (species), 67257 (subspecies)

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General

@ref: 9550

BacDive-ID: 14969

DSM-Number: 40447

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive

description: Streptomyces albus DSM 40447 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1888species
67257subspecies

strain history

@refhistory
9550<- S. A. Waksman <- A. J. Kluyver <- A. Krainsky
67770KCC S-0451 <-- IFO 13015 <-- SAJ <-- ISP 5447 <-- ATCC 618 <-- S. A. Waksman <-- A. J. Kluyver <-- A. Krainsky.

doi: 10.13145/bacdive14969.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albus
  • full scientific name: Streptomyces albus (Rossi Doria 1891) Waksman and Henrici 1943 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces flocculus
    20215Streptomyces rangoon
    20215Actinomyces gibsonii
    20215Streptotrix alba
    20215Streptomyces gibsonii
    20215Actinomyces flocculus
    20215Streptomyces almquistii
    20215Actinomyces rangoon
    20215Actinomyces almquisti
    20215Streptomyces rangoonensis

@ref: 9550

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albus subsp. albus

full scientific name: Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 91.985

colony morphology

@refcolony colorincubation periodmedium used
19455Honey yellow10-14 daysISP 2
19455Honey yellow10-14 daysISP 3
19455Brown beige10-14 daysISP 4
19455Brown beige10-14 daysISP 5
19455Brown beige10-14 daysISP 6
19455Brown beige10-14 daysISP 7

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19455yesAerial MyceliumCreamISP 2
19455yesAerial MyceliumCreamISP 3
19455yesAerial MyceliumCreamISP 4
19455yesAerial MyceliumCreamISP 5
19455yesAerial MyceliumCreamISP 6
19455yesAerial MyceliumCreamISP 7

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9550GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19455ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19455ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19455ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19455ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19455ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19455ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

culture temp

@refgrowthtypetemperature
9550positivegrowth28
19455positiveoptimum28
67770positivegrowth28

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 92.095

compound production

  • @ref: 20216
  • compound: Hydantionase

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1945562968cellulose+
1945516634raffinose+
1945526546rhamnose+
1945528757fructose+
1945529864mannitol+
1945517268myo-inositol+
1945518222xylose-
1945517992sucrose+
1945522599arabinose-
1945517234glucose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
19455+++++++-+++-+-++++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19455+++++-+---+

Isolation, sampling and environmental information

isolation

  • @ref: 9550
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_961.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_751;99_961&stattab=map
  • Last taxonomy: Streptomyces albus subclade
  • 16S sequence: AB184771
  • Sequence Identity:
  • Total samples: 204
  • soil counts: 170
  • aquatic counts: 8
  • animal counts: 22
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
95501Risk group (German classification)
194551Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces almquistii gene for 16S rRNA, partial sequence, strain: NBRC 13015AB1842581471nuccore67270
9550Streptomyces albus subsp. albus gene for 16S rRNA, partial sequence, strain: NBRC 3418AB1847711482nuccore67257
124043Streptomyces almquistii gene for 16S ribosomal RNA, partial sequence, strain: JCM 4451.D44148121nuccore1888

Genome sequences

  • @ref: 67770
  • description: Streptomyces albus NRRL B-1685
  • accession: GCA_001418125
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1888

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.985no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.982no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.286no
69480spore-formingspore-formingAbility to form endo- or exosporesyes92.095no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno88.007no

External links

@ref: 9550

culture collection no.: DSM 40447, ATCC 25427, ATCC 618, CBS 925.69, IFO 13015, ISP 5447, KCC S-0451, NBRC 13015, NRRL B-1685, RIA 1207, JCM 4451, BCRC 12098, CGMCC 4.1685, HAMBI 50, HUT 6614, IMET 43380, KCTC 9672

straininfo link

  • @ref: 84078
  • straininfo: 92770

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21571936Streptomyces panacagri sp. nov., isolated from soil of a ginseng field.Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WTInt J Syst Evol Microbiol10.1099/ijs.0.029942-02011Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny24277863Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov.Labeda DP, Doroghazi JR, Ju KS, Metcalf WWInt J Syst Evol Microbiol10.1099/ijs.0.058107-02013Algorithms, Bacterial Typing Techniques, DNA, Bacterial/genetics, Databases, Nucleic Acid, Genes, Bacterial, Likelihood Functions, Molecular Sequence Data, *Multilocus Sequence Typing, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/geneticsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9550Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40447)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40447
19455Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40447.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
84078Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92770.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy