Strain identifier

BacDive ID: 149144

Type strain: No

Species: Abiotrophia defectiva

NCBI tax ID(s): 46125 (species)

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General

@ref: 53499

BacDive-ID: 149144

keywords: Bacteria, microaerophile

description: Abiotrophia defectiva CCUG 36937 is a microaerophile bacterium that was isolated from Human blood,endocarditis,70-yr-old man.

NCBI tax id

  • NCBI tax id: 46125
  • Matching level: species

doi: 10.13145/bacdive149144.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Abiotrophia
  • species: Abiotrophia defectiva
  • full scientific name: Abiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus defectivus

@ref: 53499

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Abiotrophia

species: Abiotrophia defectiva

type strain: no

Morphology

colony morphology

  • @ref: 53499
  • incubation period: 3 days

Physiology and metabolism

oxygen tolerance

  • @ref: 53499
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53499C12:00.712
    53499C14:0414
    53499C16:019.816
    53499C18:06.218
    53499C14:1 ω7c5.713.85
    53499C16:1 ω7c/C15:0 ISO 2OH5.915.85
    53499C16:1 ω9c14.615.774
    53499C17:1 ω9c ISO1.216.416
    53499C18:1 ω7c /12t/9t6.317.824
    53499C18:1 ω9c22.117.769
    53499C18:2 ω6,9c/C18:0 ANTE6.717.724
    53499C19:1 ISO I118.473
    53499C20:2 ω6,9c0.719.735
    53499Unidentified0.813.774
    53499Unidentified1.516.172
    53499Unidentified1.319.812
    53499unknown 16.5801.416.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
53499--++-+-+----+---+-+--

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
53499--+-+-----+-+----+++----++------

Isolation, sampling and environmental information

isolation

  • @ref: 53499
  • sample type: Human blood,endocarditis,70-yr-old man
  • sampling date: 1996-11-08
  • geographic location: Danderyd
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood
#Infection#Inflammation
#Infection#Patient

External links

@ref: 53499

culture collection no.: CCUG 36937

straininfo link

  • @ref: 103594
  • straininfo: 14090

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
53499Curators of the CCUGhttps://www.ccug.se/strain?id=36937Culture Collection University of Gothenburg (CCUG) (CCUG 36937)
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
103594Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14090.1