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Strain identifier

BacDive ID: 149144

Type strain: No

Species: Abiotrophia defectiva

NCBI tax ID(s): 46125 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 53499

BacDive-ID: 149144

keywords: microaerophile, Bacteria

description: Abiotrophia defectiva CCUG 36937 is a microaerophile bacterium that was isolated from Human blood,endocarditis,70-yr-old man.

NCBI tax id

  • NCBI tax id: 46125
  • Matching level: species

doi: 10.13145/bacdive149144.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Abiotrophia
  • species: Abiotrophia defectiva
  • full scientific name: Abiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995
  • synonyms

    • @ref: 20215
    • synonym: Streptococcus defectivus

@ref: 53499

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Abiotrophia

species: Abiotrophia defectiva

type strain: no

Morphology

colony morphology

  • @ref: 53499
  • incubation period: 3 days

Physiology and metabolism

oxygen tolerance

  • @ref: 53499
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917992sucrose+fermentation
6837917716lactose-fermentation
6837917306maltose+fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837916988D-ribose-fermentation
6837917634D-glucose+fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate-reduction
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53499C12:00.712
    53499C14:0414
    53499C16:019.816
    53499C18:06.218
    53499C14:1 ω7c5.713.85
    53499C16:1 ω7c/C15:0 ISO 2OH5.915.85
    53499C16:1 ω9c14.615.774
    53499C17:1 ω9c ISO1.216.416
    53499C18:1 ω7c /12t/9t6.317.824
    53499C18:1 ω9c22.117.769
    53499C18:2 ω6,9c/C18:0 ANTE6.717.724
    53499C19:1 ISO I118.473
    53499C20:2 ω6,9c0.719.735
    53499Unidentified0.813.774
    53499Unidentified1.516.172
    53499Unidentified1.319.812
    53499unknown 16.5801.416.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
53499--++-+-+----+---+-+--

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
53499--+-+-----+-+----+++----++------

Isolation, sampling and environmental information

isolation

  • @ref: 53499
  • sample type: Human blood,endocarditis,70-yr-old man
  • sampling date: 1996-11-08
  • geographic location: Danderyd
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood
#Infection#Inflammation
#Infection#Patient

External links

@ref: 53499

culture collection no.: CCUG 36937

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
53499Curators of the CCUGhttps://www.ccug.se/strain?id=36937Culture Collection University of Gothenburg (CCUG) (CCUG 36937)
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR