Strain identifier

BacDive ID: 14791

Type strain: No

Species: Streptococcus gordonii

Strain Designation: SK 51

Strain history: CIP <- 1988, NCTC <- 1930, D. Thomson, Streptococcus mitis: strain SK 51

NCBI tax ID(s): 1302 (species)

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General

@ref: 8918

BacDive-ID: 14791

DSM-Number: 20568

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus gordonii SK 51 is a microaerophile, mesophilic bacterium that was isolated from pyorrhoea.

NCBI tax id

  • NCBI tax id: 1302
  • Matching level: species

strain history

@refhistory
8918<- NCTC <- D. Thomson (Streptococcus mitis)
119710CIP <- 1988, NCTC <- 1930, D. Thomson, Streptococcus mitis: strain SK 51

doi: 10.13145/bacdive14791.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus gordonii
  • full scientific name: Streptococcus gordonii Kilian et al. 1989

@ref: 8918

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus gordonii

full scientific name: Streptococcus gordonii Kilian et al. 1989

strain designation: SK 51

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.298
69480100positive
119710nopositivecoccus-shaped

colony morphology

  • @ref: 8918
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8918TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
8918COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
35514MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119710CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
119710CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
8918positivegrowth37mesophilic
35514positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8918microaerophile
119710facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.865

murein

  • @ref: 8918
  • murein short key: A11.05
  • type: A3alpha L-Lys-L-Ala2

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119710nitrate-reduction17632
119710nitrite-reduction16301
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381urea-hydrolysis16199

metabolite production

@refChebi-IDmetaboliteproduction
11971035581indoleno
6838115688acetoinno

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
8918catalase+1.11.1.6
8918cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
119710oxidase-
119710catalase-1.11.1.6
119710urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119710-+++-++---++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119710---------++++--------+++++++--++------+--+/-------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8918-++--+---++-+----+---+---+---++-
8918-++--+/-----+-+----+-------+---+/-+-
46814+++--+----+-+----+-------+----+-

Isolation, sampling and environmental information

isolation

@refsample type
8918pyorrhoea
46814Pyorrhoea
119710Human, Pyorrhea

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host Body-Site#Oral cavity and airways#Tooth

taxonmaps

  • @ref: 69479
  • File name: preview.99_978.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_490;98_763;99_978&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: AY281089
  • Sequence Identity:
  • Total samples: 151976
  • soil counts: 2729
  • aquatic counts: 4744
  • animal counts: 143458
  • plant counts: 1045

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89182Risk group (German classification)
1197102Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus mitis DNA for 16S rRNA, strain NCTC 3165, MAFF 911479AB0025201377ena28037
20218Streptococcus gordonii ATCC 33399 16S ribosomal RNA gene, partial sequenceAY2810891438ena1302
20218Streptococcus gordonii strain NCTC 3165 16S-23S ribosomal RNA intergenic spacer, partial sequenceEU860337324ena1302
20218Streptococcus mitis NCTC 3165 16S rRNA gene, partial sequenceU02918396ena28037

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus gordonii NCTC3165GCA_900475385completencbi1302
66792Streptococcus gordonii strain FDAARGOS 14551302.426completepatric1302
66792Streptococcus gordonii strain NCTC31651302.169completepatric1302
66792Streptococcus gordonii NCTC 31652909141109completeimg28037

GC content

  • @ref: 8918
  • GC-content: 38.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno95.916no
gram-positiveyes94.517no
anaerobicno97.419yes
aerobicno96.405yes
halophileyes77.664no
spore-formingno91.904no
thermophileno99.542yes
glucose-utilyes85.077no
motileno95.535no
glucose-fermentyes79.402no

External links

@ref: 8918

culture collection no.: DSM 20568, ATCC 33399, NCTC 3165, CCUG 18374, LMG 14516, LMG 14648, CIP 103221

straininfo link

  • @ref: 83908
  • straininfo: 7995

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity24473989Photodynamic antimicrobial effect of safranine O on an ex vivo periodontal biofilm.Voos AC, Kranz S, Tonndorf-Martini S, Voelpel A, Sigusch H, Staudte H, Albrecht V, Sigusch BWLasers Surg Med10.1002/lsm.222172014Aggregatibacter actinomycetemcomitans/physiology, Anti-Bacterial Agents/pharmacology/*therapeutic use, Biofilms/*drug effects, Chlorhexidine/pharmacology/therapeutic use, Chronic Disease, Fusobacterium nucleatum/physiology, Humans, Periodontitis/*drug therapy/microbiology, Phenazines/pharmacology/*therapeutic use, *Photochemotherapy, Photosensitizing Agents/pharmacology/*therapeutic use, Porphyromonas gingivalis/physiology, Streptococcus gordonii/physiology, Treatment Outcome
Pathogenicity28645637Antimicrobial and biological activity of leachate from light curable pulp capping materials.Arias-Moliz MT, Farrugia C, Lung CYK, Wismayer PS, Camilleri JJ Dent10.1016/j.jdent.2017.06.0062017Aluminum Compounds/pharmacology, Anti-Bacterial Agents/chemistry/*pharmacology, Calcium/analysis, Calcium Compounds/pharmacology, Cell Proliferation/drug effects, Composite Resins/chemistry, Dental Materials/chemistry/*pharmacology, *Dental Pulp Capping, Drug Combinations, Humans, Hydrogen-Ion Concentration, *Light-Curing of Dental Adhesives, *Materials Testing, Microbial Sensitivity Tests, Microscopy, Electron, Scanning, Oxides/pharmacology, Pulp Capping and Pulpectomy Agents/chemistry/*pharmacology, Silicates/pharmacology, Spectrometry, X-Ray Emission, Streptococcus gordonii/drug effects/growth & development/metabolism, Streptococcus mutans/drug effects/growth & development/metabolism, Streptococcus sobrinus/drug effects/growth & development/metabolism, Surface Properties, X-Ray DiffractionMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8918Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20568)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20568
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35514Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14995
46814Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 18374)https://www.ccug.se/strain?id=18374
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83908Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7995.1StrainInfo: A central database for resolving microbial strain identifiers
119710Curators of the CIPCollection of Institut Pasteur (CIP 103221)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103221