Strain identifier

BacDive ID: 14765

Type strain: Yes

Species: Streptococcus salivarius

Strain Designation: 275

Strain history: CIP <- 1986, DSMZ <- ATCC <- New-York State Dept. Hlth., USA: strain 275, Streptococcus cardioarthritidis <- J.C. Small

NCBI tax ID(s): 1304 (species)

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General

@ref: 8910

BacDive-ID: 14765

DSM-Number: 20560

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped

description: Streptococcus salivarius 275 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from blood from patient with acute articula rheumatism.

NCBI tax id

  • NCBI tax id: 1304
  • Matching level: species

strain history

@refhistory
8910<- ATCC; ATCC 7073 <- NYSDH; 275 <- J.C. Small;
67770DSM 20560 <-- ATCC 7073 <-- New York State Dept. Health, USA; 275 <-- J. C. Small.
122390CIP <- 1986, DSMZ <- ATCC <- New-York State Dept. Hlth., USA: strain 275, Streptococcus cardioarthritidis <- J.C. Small

doi: 10.13145/bacdive14765.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus salivarius
  • full scientific name: Streptococcus salivarius Andrewes and Horder 1906 (Approved Lists 1980)

@ref: 8910

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus salivarius subsp. salivarius

full scientific name: Streptococcus salivarius subsp. salivarius (Andrewes and Horder 1906) Farrow and Collins 1984

strain designation: 275

type strain: yes

Morphology

cell morphology

  • @ref: 122390
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysishemolysis abilityincubation period
8910alpha11-2 days
122390

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8910COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8910TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42093MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122390CIP Medium 6-Boites-Bioradyeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6-Boites-Biorad
122390CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
122390CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
8910positivegrowth37mesophilic
42093positivegrowth37mesophilic
67770positivegrowth37mesophilic
122390positivegrowth25-41
122390nogrowth10psychrophilic
122390nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8910microaerophile
122390facultative anaerobe

halophily

  • @ref: 122390
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 8910
  • murein short key: A11.05
  • type: A3alpha L-Lys-L-Ala2

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1223904853esculin+hydrolysis
122390606565hippurate+hydrolysis
12239017632nitrate-reduction
12239016301nitrite-reduction
6838129016arginine-hydrolysis
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
12239015688acetoin+

enzymes

@refvalueactivityec
8910cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
122390oxidase-
122390beta-galactosidase-3.2.1.23
122390alcohol dehydrogenase-1.1.1.1
122390catalase-1.11.1.6
122390gamma-glutamyltransferase-2.3.2.2
122390lysine decarboxylase-4.1.1.18
122390ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122390-++--+----++---+----

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8910-+---+/-----+++---++---+--++--+---
8910-+---+/-----++/-+---++---+--++--+/----
8910-+--------+-+---++------++--+---
8910-+---+/-+/----+++---++------++--+---
8910-+---+----+++---++---+--++--+---
8910-+---+/-----+++---++---+--++--+---
8910-+---+----+++---++---+--++--+---

Isolation, sampling and environmental information

isolation

@refsample type
8910blood from patient with acute articula rheumatism
122390Human, Blood, acute articular rheumatism

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Infection#Patient
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_131.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_107;98_116;99_131&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: LC071828
  • Sequence Identity:
  • Total samples: 228807
  • soil counts: 3877
  • aquatic counts: 10320
  • animal counts: 212872
  • plant counts: 1738

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89102Risk group (German classification)
1223902Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus salivarius strain ATCC 7073 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY347561270ena1304
20218Streptococcus salivarius strain ATCC 7073 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceJN181390537ena1304
20218Streptococcus salivarius ATCC 7073 16S rRNA gene, partial sequenceU02923319ena1304
20218S.salivarius 16S rRNAX583201333ena1304
20218Streptococcus salivarius DNA, 16S-23S rRNA intergenic spacer regionAB051016273ena1304
8910Streptococcus salivarius strain ATCC 7073 16S ribosomal RNA gene, complete sequenceAY1883521546ena1304
67770Streptococcus salivarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 5707LC0718281442ena1304

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus salivarius NCTC8618GCA_900636435completencbi1304
66792Streptococcus salivarius NCTC 8618GCA_000785515completencbi1304
66792Streptococcus salivarius JCM 5707GCA_019972895contigncbi1304
66792Streptococcus salivarius strain ATCC 70731304.213wgspatric1304
66792Streptococcus salivarius strain JCM 57071304.1712wgspatric1304
66792Streptococcus salivarius strain NCTC 86181304.173completepatric1304
66792Streptococcus salivarius strain NCTC86181304.426completepatric1304
66792Streptococcus salivarius NCTC 86182684623183completeimg1304
66792Streptococcus salivarius ATCC 70732687453658draftimg1304
67770Streptococcus salivarius ATCC 7073GCA_900143035scaffoldncbi1304
66792Streptococcus salivarius strain JCM 57071304.1759wgspatric1304
66792Streptococcus salivarius strain JCM 57071304.1720wgspatric1304
66792Streptococcus salivarius strain JCM 57071304.1737wgspatric1304

GC content

  • @ref: 8910
  • GC-content: 39.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno95.354no
gram-positiveyes95.204no
anaerobicno94.296yes
aerobicno97.072yes
halophileyes71.942no
spore-formingno93.863no
thermophileno99.797yes
glucose-utilyes86.443no
motileno95.449no
glucose-fermentyes85.343no

External links

@ref: 8910

culture collection no.: DSM 20560, ATCC 7073, NCTC 8618, JCM 5707, BCRC 17388, CCM 4046, CCUG 11878, CCUG 17825, CCUG 50207, CECT 805, CIP 102503, HAMBI 1716, LMG 11489, NCFB 1779, NCIMB 701779, IMET 3163, NCDO 1779

straininfo link

  • @ref: 83882
  • straininfo: 105398

literature

Pubmed-IDtitleauthorsjournalyearmeshtopicDOItopic2
1401427Growth interaction between Candida albicans and Streptococcus salivarius: in vitro and in vivo studies.de Miranda CM, van Wyk CW, Basson NJJ Dent Assoc S Afr1992Animals, Antibiosis, Candida albicans/*growth & development, Colony Count, Microbial, Germ-Free Life, Mice, Mouth/microbiology, Streptococcus/growth & development/*physiology
9721653Random amplified polymorphic DNA and amplified ribosomal DNA spacer polymorphism: powerful methods to differentiate Streptococcus thermophilus strains.Moschetti G, Blaiotta G, Aponte M, Catzeddu P, Villani F, Deiana P, Coppola SJ Appl Microbiol1998Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/*genetics, DNA, Ribosomal/*genetics, Electrophoresis, Gel, Pulsed-Field, Enterococcus/classification/genetics, Polymerase Chain Reaction, Random Amplified Polymorphic DNA Technique, Streptococcus/*classification/*geneticsEnzymology10.1046/j.1365-2672.1998.00461.xPhylogeny
11412350Identification of Streptococcus salivarius by PCR and DNA probe.Igarashi T, Yano Y, Yamamoto A, Sasa R, Goto NLett Appl Microbiol2001DNA Primers, *DNA Probes, Dextranase/genetics/isolation & purification, Mouth/microbiology, Polymerase Chain Reaction/*methods, Streptococcus/enzymology/genetics/*isolation & purificationEnzymology10.1046/j.1472-765x.2001.00928.xPhylogeny
19594623The streptococcal inhibitor of complement (SIC) protects Streptococcus pyogenes from bacteriocin-like inhibitory substance (BLIS) from Streptococcus salivarius.Minami M, Ohmori D, Tatsuno I, Isaka M, Kawamura Y, Ohta M, Hasegawa TFEMS Microbiol Lett2009Anti-Bacterial Agents/*pharmacology, Antibiosis, Bacterial Proteins/analysis/genetics/*physiology, Bacteriocins/*pharmacology, *Drug Resistance, Bacterial, Electrophoresis, Gel, Two-Dimensional, Gene Deletion, Humans, Streptococcus pyogenes/chemistry/*drug effects/*physiologyPathogenicity10.1111/j.1574-6968.2009.01696.xEnzymology
23065893Evaluation of bacterial adhesion on machined titanium, Osseotite(R) and Nanotite(R) discs.Rodriguez y Baena R, Arciola CR, Selan L, Battaglia R, Imbriani M, Rizzo S, Visai LInt J Artif Organs2012Acid Etching, Dental, Aggregatibacter actinomycetemcomitans/growth & development/*isolation & purification, *Bacterial Adhesion, *Calcium Phosphates, Colony Count, Microbial, Dental Implants/*adverse effects/microbiology, Microbial Viability, Microscopy, Confocal, Microscopy, Electron, Scanning, Nanoparticles, Porphyromonas gingivalis/growth & development/*isolation & purification, Prosthesis Design, Prosthesis-Related Infections/*microbiology/prevention & control, Streptococcus/growth & development/*isolation & purification, Surface Properties, *TitaniumEnzymology10.5301/ijao.5000143Phylogeny
24610586Effective oral health in infective endocarditis: efficacy of high-street mouthwashes against the viridans group streptococci.Elshibly A, Coulter WA, Millar BC, Prendergast BD, Thornhill M, Irwin C, Goldsmith CE, Moore JEJ Investig Clin Dent2014Anti-Infective Agents, Local/*pharmacology, Bacteriological Techniques, Cetylpyridinium/pharmacology, Chlorhexidine/analogs & derivatives/pharmacology, Drug Combinations, Endocarditis, Bacterial/*microbiology, Humans, Mouth/*microbiology, Mouthwashes/*pharmacology, Oral Health, Salicylates/pharmacology, Streptococcal Infections/*microbiology, Streptococcus/drug effects, Streptococcus gordonii/drug effects, Streptococcus intermedius/drug effects, Streptococcus mutans/drug effects, Streptococcus oralis/drug effects, Streptococcus pneumoniae/drug effects, Terpenes/pharmacology, Viridans Streptococci/*drug effectsPathogenicity10.1111/jicd.12088
27135005Comparative Evaluation of Antimicrobial Activity of Pomegranate-Containing Mouthwash Against Oral-Biofilm Forming Organisms: An Invitro Microbial Study.Dabholkar CS, Shah M, Kathariya R, Bajaj M, Doshi YJ Clin Diagn Res201610.7860/JCDR/2016/16478.7475
29054025Antibacterial activity against cariogenic bacteria and cytotoxic and genotoxic potential of Anacardium occidentale L. and Anadenanthera macrocarpa (Benth.) Brenan extracts.de Araujo JSC, de Castilho ARF, Lira AB, Pereira AV, de Azevedo TKB, de Brito Costa EMM, Pereira MDSV, Pessoa HLF, Pereira JVArch Oral Biol2017Anacardium/*chemistry, Animals, Anti-Bacterial Agents/*pharmacology, Cariostatic Agents/*pharmacology, Dental Caries/*microbiology, Fabaceae/*chemistry, Hemolysis/drug effects, Humans, Mice, Microbial Sensitivity Tests, Plant Bark/*chemistry, Plant Extracts/*pharmacology, Streptococcus/*drug effectsPathogenicity10.1016/j.archoralbio.2017.10.008
33261593Interkingdom interaction between C. albicans and S. salivarius on titanium surfaces.Martorano-Fernandes L, Rodrigues NC, de Souza Borges MH, Cavalcanti YW, de Almeida LFDBMC Oral Health2020Biofilms, *Candida albicans, Humans, Hyphae, Streptococcus salivarius, *TitaniumPathogenicity10.1186/s12903-020-01334-w

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8910Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20560)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20560
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42093Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14196
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83882Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID105398.1StrainInfo: A central database for resolving microbial strain identifiers
122390Curators of the CIPCollection of Institut Pasteur (CIP 102503)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102503