Strain identifier

BacDive ID: 14725

Type strain: Yes

Species: Streptococcus equi subsp. zooepidemicus

Strain Designation: S 34, S34

Strain history: CIP <- 1988, NCFB <- Nat. Inst. Res. Dairying, Shinfield, UK <- A.W. Stableforth, Central Vet. Lab., Weybridge, UK: strain S34

NCBI tax ID(s): 40041 (subspecies)

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General

@ref: 9037

BacDive-ID: 14725

DSM-Number: 20727

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, human pathogen

description: Streptococcus equi subsp. zooepidemicus S 34 is a microaerophile human pathogen of the family Streptococcaceae.

NCBI tax id

  • NCBI tax id: 40041
  • Matching level: subspecies

strain history

@refhistory
9037<- NCDO <- NIRD <- A.W. Stableforth, S 34 (Streptococcus zooepidemicus)
119117CIP <- 1988, NCFB <- Nat. Inst. Res. Dairying, Shinfield, UK <- A.W. Stableforth, Central Vet. Lab., Weybridge, UK: strain S34

doi: 10.13145/bacdive14725.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus equi subsp. zooepidemicus
  • full scientific name: Streptococcus equi subsp. zooepidemicus (ex Frost and Englebrecht 1936) Farrow and Collins 1985

@ref: 9037

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus equi subsp. zooepidemicus

full scientific name: Streptococcus equi subsp. zooepidemicus (ex Frost and Englebrecht 1936) Farrow and Collins 1985

strain designation: S 34, S34

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119117positivecoccus-shapedno
69480no92

colony morphology

@reftype of hemolysishemolysis abilityincubation period
9037beta11-2 days
1191171

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9037COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9037TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39848MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119117CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
119117CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119117CIP Medium 6-Boites-Bioradyeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6-Boites-Biorad

culture temp

@refgrowthtypetemperature
9037positivegrowth37
39848positivegrowth37
119117positivegrowth30-41
119117nogrowth10
119117nogrowth25
119117nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
9037microaerophile
119117facultative anaerobe

halophily

  • @ref: 119117
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 9037
  • murein short key: A11.05
  • type: A3alpha L-Lys-L-Ala2

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1191174853esculin-hydrolysis
11911717632nitrate-reduction
11911716301nitrite-reduction
6838129016arginine+hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol+builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen+builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
9037catalase-1.11.1.6
9037cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381arginine dihydrolase+3.5.3.6
119117oxidase-
119117beta-galactosidase+3.2.1.23
119117alcohol dehydrogenase-1.1.1.1
119117catalase-1.11.1.6
119117lysine decarboxylase-4.1.1.18
119117ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119117-+++++++-+++--++----

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
9037+--+-++-++--+--+-+-----+++--+-+-
9037++++-++-++--+--+-+-----+++--+---
9037+--+-++-++--+--+-+-----+++--+---
9037++/--+-++-++--+--+-+-----+++--+-+-
9037++++-++-++--+--+-+-----+++--+-+-
9037++-+-++-++--+--+-+-----+++--+-+-
9037++++-++-++--+--+-+-----+++--+-+-
9037++-+-++-++--+--+-+-----+++--+-+-

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
39848United KingdomGBREurope
47770Bovine mastitis
119117United KingdomGBREuropeAnimal, Bovine, mastitis1933

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Infection#Disease
#Infection#Inflammation
#Host Body-Site#Organ#Mammary gland

taxonmaps

  • @ref: 69479
  • File name: preview.99_35.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_29;97_30;98_33;99_35&stattab=map
  • Last taxonomy: Streptococcus equi subclade
  • 16S sequence: EF406034
  • Sequence Identity:
  • Total samples: 38302
  • soil counts: 528
  • aquatic counts: 1334
  • animal counts: 36180
  • plant counts: 260

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
9037yesyes2Risk group (German classification)
1191172Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus equi subsp. zooepidemicus strain ATCC 43079 16S ribosomal RNA gene, partial sequenceEF4060341475nuccore40041
9037Streptococcus equi DNA for 16S rRNA, strain ATCC 43079AB0025161450nuccore40041

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus equi subsp. zooepidemicus NCTC7023GCA_900460185contigncbi40041
66792Streptococcus equi subsp. zooepidemicus NCTC4676GCA_900459475contigncbi40041
66792Streptococcus equi subsp. zooepidemicus strain NCTC467640041.60wgspatric40041
66792Streptococcus equi subsp. zooepidemicus strain NCTC702340041.61wgspatric40041

GC content

  • @ref: 9037
  • GC-content: 41.3

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes86.099no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no92.459no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.118no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no98.449no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.942yes
69480flagellatedmotile2+Ability to perform flagellated movementno92no

External links

@ref: 9037

culture collection no.: CCUG 23256, NCTC 4676, CIP 103228, DSM 20727, ATCC 43079, NCDO 1358, NCTC 7023, NBIMCC 2033

straininfo link

  • @ref: 83843
  • straininfo: 8030

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9037Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20727)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20727
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39848Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15003
47770Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 23256)https://www.ccug.se/strain?id=23256
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83843Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8030.1StrainInfo: A central database for resolving microbial strain identifiers
119117Curators of the CIPCollection of Institut Pasteur (CIP 103228)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103228