Archive BacDiveID:10.13145/bacdive14624.20230509.8.1

Strain identifier

BacDive ID: 14624

Type strain:

Species: Staphylococcus saprophyticus subsp. saprophyticus

Strain Designation: lC-31

Strain history: <- CCM <- NCTC <- M.T. Parker, lC-31

NCBI tax ID(s): 29385 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 8444

BacDive-ID: 14624

DSM-Number: 20038

keywords: 16S sequence, Bacteria, mesophilic

description: Staphylococcus saprophyticus subsp. saprophyticus lC-31 is a mesophilic bacterium that was isolated from ice cream.

NCBI tax id

NCBI tax id: 29385
Matching level: species

strain history

@ref: 8444
history: <- CCM <- NCTC <- M.T. Parker, lC-31

doi: 10.13145/bacdive14624.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus saprophyticus subsp. saprophyticus
full scientific name: Staphylococcus saprophyticus subsp. saprophyticus (Fairbrother 1940) Hájek et al. 1996

@ref: 8444

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus saprophyticus subsp. saprophyticus

full scientific name: Staphylococcus saprophyticus subsp. saprophyticus (Fairbrother 1940) Hájek et al. 1996

strain designation: lC-31

type strain: no

Culture and growth conditions

culture medium

@ref: 8444
name: CORYNEBACTERIUM AGAR (DSMZ Medium 53)
growth: yes
link: https://mediadive.dsmz.de/medium/53
composition: Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@ref: 8444
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

murein

@ref: 8444
murein short key: A11.03
type: A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

Isolation, sampling and environmental information

isolation

@ref: 8444
sample type: ice cream

isolation source categories

Cat1: #Engineered
Cat2: #Food production
Cat3: #Sugary food

Safety information

risk assessment

@ref: 8444
biosafety level: 2
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 20218
description: Staphylococcus saprophyticus subsp. saprophyticus strain DSM 20038 16S ribosomal RNA gene, partial sequence
accession: AY688089
length: 464
database: ena
NCBI tax ID: 147452

GC content

@ref: 8444
GC-content: 30.8

External links

@ref: 8444

culture collection no.: DSM 20038, CCM 2204, NCTC 7612

straininfo link

@ref: 83752
straininfo: 49566

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
8444	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20038)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-20038
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
83752	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID49566.1	StrainInfo: A central database for resolving microbial strain identifiers