Strain identifier

BacDive ID: 14468

Type strain: No

Species: Staphylococcus aureus

Strain Designation: Dack 137

Strain history: <- CCUG <- NCTC <- ATCC

NCBI tax ID(s): 1280 (species)

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General

@ref: 7596

BacDive-ID: 14468

DSM-Number: 18587

keywords: genome sequence, Bacteria, mesophilic, Gram-positive, human pathogen

description: Staphylococcus aureus Dack 137 is a mesophilic, Gram-positive human pathogen that was isolated from human leg abscess.

NCBI tax id

  • NCBI tax id: 1280
  • Matching level: species

strain history

  • @ref: 7596
  • history: <- CCUG <- NCTC <- ATCC

doi: 10.13145/bacdive14468.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus aureus
  • full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Staphylococcus aureus subsp. anaerobius

@ref: 7596

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus aureus

full scientific name: Staphylococcus aureus Rosenbach 1884

strain designation: Dack 137

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

colony morphology

  • @ref: 7596
  • type of hemolysis: beta
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7596COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7596TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 7596
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.192

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose+fermentation
6837522599arabinose-fermentation
6837817634D-glucose-builds acid from
6837815824D-fructose+builds acid from
6837816024D-mannose+builds acid from
6837817306maltose+builds acid from
6837817716lactose+builds acid from
6837827082trehalose+builds acid from
6837816899D-mannitol+builds acid from
6837817151xylitol+builds acid from
6837828053melibiose-builds acid from
6837817632nitrate-reduction
6837816634raffinose+builds acid from
6837865327D-xylose-builds acid from
6837817992sucrose-builds acid from
68378320061methyl alpha-D-glucopyranoside+builds acid from
6837859640N-acetylglucosamine-builds acid from
6837829016arginine+hydrolysis
6837816199urea+hydrolysis

antibiotic resistance

@refmetaboliteis antibioticis sensitiveChEBIsensitivity conc.
68378lysostaphinyesyes
68375novobiocinyesyes283681.8 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837815688acetoinyes
6837515688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837815688acetoin+
6837515688acetoin-

enzymes

@refvalueactivityec
7596catalase+1.11.1.6
7596cytochrome-c oxidase-1.9.3.1
68378urease+3.5.1.5
68378arginine dihydrolase+3.5.3.6
68378alkaline phosphatase+3.1.3.1
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
7596-+--+++++++---+---+--+++--
7596----+++++++---+---++-+++--
7596-+--+++++++---+---+--+++--

API STA

@refGLUFRUMNEMALLACTREMANXLTMELNITPALVPRAFXYLSACMDGNAGADHURELSTR
48295-+++++++--+++--+-++-

Isolation, sampling and environmental information

isolation

@refsample type
7596human leg abscess
48295Human leg,abscess

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Abscess
#Host Body-Site#Limb#Leg

Safety information

risk assessment

  • @ref: 7596
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus aureus NCTC10655GCA_900458145contigncbi1280
66792Staphylococcus aureus strain NCTC106551280.18099wgspatric1280

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.115no
gram-positiveyes87.785no
anaerobicno99.47no
aerobicyes89.979no
halophileyes92.769no
spore-formingno92.377no
thermophileno99.751no
glucose-utilyes88.24no
flagellatedno92.585no
glucose-fermentyes86.233no

External links

@ref: 7596

culture collection no.: DSM 18587, ATCC 19095, CCUG 25925, NCTC 10655

straininfo link

  • @ref: 83607
  • straininfo: 36848

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology8061655Isolation of an adhesin from Staphylococcus aureus that binds Lewis a blood group antigen and its relevance to sudden infant death syndrome.Saadi AT, Weir DM, Poxton IR, Stewart J, Essery SD, Blackwell CC, Raza MW, Busuttil AFEMS Immunol Med Microbiol10.1111/j.1574-695X.1994.tb00458.x1994*Adhesins, Bacterial, Bacterial Adhesion/*immunology/*physiology, Binding, Competitive, Cell Wall/chemistry, Cheek, Chromatography, Affinity, Electrophoresis, Polyacrylamide Gel, Humans, Infant, Lewis Blood Group Antigens/*metabolism, Mouth Mucosa/cytology, Staphylococcus aureus/*immunology, Sudden Infant Death/etiologyPathogenicity
Enzymology9217102MPN-PCR-quantification method for staphylococcal enterotoxin c1 gene from fresh cheese.Mantynen V, Niemela S, Kaijalainen S, Pirhonen T, Lindstrom KInt J Food Microbiol10.1016/s0168-1605(97)01243-91997Cheese/*microbiology, DNA, Bacterial/isolation & purification, Enterotoxins/*genetics, Polymerase Chain Reaction/*methods, Staphylococcus aureus/*pathogenicityPhylogeny
Metabolism10225293Binding of bacteria to HEp-2 cells infected with influenza A virus.El Ahmer OR, Raza MW, Ogilvie MM, Weir DM, Blackwell CCFEMS Immunol Med Microbiol10.1111/j.1574-695X.1999.tb01255.x1999Animals, Antigens, Surface/biosynthesis, Bacterial Adhesion/*physiology, CD18 Antigens/metabolism, Cell Line, Dogs, Gram-Negative Bacteria/*physiology, Gram-Positive Bacteria/*physiology, Humans, Influenza A virus/*physiology, Lipopolysaccharide Receptors/metabolism, Neisseria meningitidis/physiology, Neuraminidase/metabolism, Tumor Cells, CulturedPathogenicity
Pathogenicity23988021Differential arthritogenicity of Staphylococcus aureus strains isolated from biological samples.Colavite-Machado PM, Ishikawa LL, Franca TG, Zorzella-Pezavento SF, da Rosa LC, Chiuso-Minicucci F, da Cunha Mde L, Garlet GP, Sartori ABMC Infect Dis10.1186/1471-2334-13-4002013Animals, Antigens, Bacterial/immunology, Arthritis, Infectious/immunology/*microbiology, Humans, Interleukin-17/immunology, Interleukin-6/immunology, Male, Mice, Mice, Inbred C57BL, Staphylococcal Infections/immunology/*microbiology, Staphylococcus aureus/*immunology/isolation & purification, Superantigens/immunologyEnzymology
Metabolism26695535Cloxacillin control of experimental arthritis induced by SEC(+) Staphylococcus aureus is associated with downmodulation of local and systemic cytokines.Colavite PM, Ishikawa LL, Zorzella-Pezavento SF, Oliveira LR, Franca TG, da Rosa LC, Chiuso-Minicucci F, Vieira AE, Francisconi CF, da Cunha Mde L, Garlet GP, Sartori ACell Microbiol10.1111/cmi.125632016Animals, Anti-Bacterial Agents/*pharmacology, Arthritis, Experimental/drug therapy/microbiology/pathology, Arthritis, Infectious/*drug therapy/immunology/microbiology/pathology, Cloxacillin/*pharmacology, Cytokines/genetics/metabolism, Enterotoxins/metabolism, Male, Mice, Inbred C57BL, Staphylococcal Infections/*drug therapy, Staphylococcus aureus/metabolism/*pathogenicity, Transcription Factors/geneticsPathogenicity
Biotechnology28604174Predicting and Modelling the Growth of Potentially Pathogenic Bacteria in Coalho Cheese.de Araujo VG, de Oliveira Arruda MD, Dantas Duarte FN, de Sousa JMB, da Costa Lima M, da Conceicao ML, Schaffner DW, de Souza ELJ Food Prot10.4315/0362-028X.JFP-16-5232017Bacteria/*growth & development, Brazil, Cheese/*microbiology, Colony Count, Microbial, Escherichia coli/growth & development, *Food Microbiology, Listeria monocytogenes/growth & development, *Models, Biological, Staphylococcus aureus/growth & development, Temperature
29568291Macroalgae Extracts From Antarctica Have Antimicrobial and Anticancer Potential.Martins RM, Nedel F, Guimaraes VBS, da Silva AF, Colepicolo P, de Pereira CMP, Lund RGFront Microbiol10.3389/fmicb.2018.004122018
31785295Unveiling the potentials of bacteriocin (Pediocin L50) from Pediococcus acidilactici with antagonist spectrum in a Caenorhabditis elegans model.Chelliah R, Saravanakumar K, Daliri EB, Kim JH, Lee JK, Jo HY, Kim SH, Ramakrishnan SR, Madar IH, Wei S, Rubab M, Barathikannan K, Ofosu FK, Subin H, Eun-Ji P, Yeong JD, Elahi F, Wang MH, Park JH, Ahn J, Kim DH, Park SJ, Oh DHInt J Biol Macromol10.1016/j.ijbiomac.2019.10.1962019Animals, *Anti-Bacterial Agents/chemistry/pharmacology, *Bacterial Infections/drug therapy/microbiology, Caenorhabditis elegans/*microbiology, *Pediocins/chemistry/pharmacology, Pediococcus acidilactici/*chemistry, *Probiotics/chemistry/pharmacology
Phylogeny34416969High throughput screening of technological and biopreservation traits of a large set of wild lactic acid bacteria from Brazilian artisanal cheeses.Margalho LP, Kamimura BA, Brexo RP, Alvarenga VO, Cebeci AS, Janssen PWM, Dijkstra A, Starrenburg MJC, Sheombarsing RS, Cruz AG, Alkema W, Bachmann H, Sant'Ana ASFood Microbiol10.1016/j.fm.2021.1038722021Antibiosis, Brazil, Cheese/*microbiology, High-Throughput Screening Assays, Lactobacillales/classification/genetics/*isolation & purification/physiology, Listeria monocytogenes/growth & development, PhylogenyEnzymology

Reference

@idauthorscataloguedoi/urltitle
7596Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18587)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18587
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
48295Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 25925)https://www.ccug.se/strain?id=25925
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
68378Automatically annotated from API STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83607Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36848.1StrainInfo: A central database for resolving microbial strain identifiers