Strain identifier

BacDive ID: 14419

Type strain: Yes

Species: Macrococcus caseolyticus

Strain Designation: 235

Strain history: <- K.H. Schleifer <- ATCC <- A.G. Lochhead, 235 (Micrococcus caseolyticus)

NCBI tax ID(s): 69966 (species)

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General

@ref: 8945

BacDive-ID: 14419

DSM-Number: 20597

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, animal pathogen

description: Macrococcus caseolyticus 235 is an aerobe, mesophilic animal pathogen of the family Staphylococcaceae.

NCBI tax id

  • NCBI tax id: 69966
  • Matching level: species

strain history

  • @ref: 8945
  • history: <- K.H. Schleifer <- ATCC <- A.G. Lochhead, 235 (Micrococcus caseolyticus)

doi: 10.13145/bacdive14419.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Macrococcus
  • species: Macrococcus caseolyticus
  • full scientific name: Macrococcus caseolyticus (Schleifer et al. 1982 ex Evans 1916) Kloos et al. 1998

  • synonyms

    @refsynonym
    20215Macrococcoides caseolyticus
    20215Staphylococcus caseolyticus

@ref: 8945

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Macrococcus

species: Macrococcus caseolyticus subsp. caseolyticus

full scientific name: Macrococcus caseolyticus subsp. caseolyticus (Schleifer et al. 1982) Mašla?ová et al. 2018

strain designation: 235

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 8945
  • name: CORYNEBACTERIUM AGAR (DSMZ Medium 53)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/53
  • composition: Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8945positivegrowth37mesophilic
46291positivegrowth26mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46291
  • oxygen tolerance: aerobe

murein

  • @ref: 8945
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose-fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517306maltose-fermentation
6837517716lactose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose-fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8945-----+---+/-----++----------

Isolation, sampling and environmental information

isolation

  • @ref: 46291
  • sampling date: 1983-10-07

taxonmaps

  • @ref: 69479
  • File name: preview.99_2313.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1248;97_1481;98_1805;99_2313&stattab=map
  • Last taxonomy: Macrococcus
  • 16S sequence: D83359
  • Sequence Identity:
  • Total samples: 10750
  • soil counts: 1069
  • aquatic counts: 930
  • animal counts: 8379
  • plant counts: 372

Safety information

risk assessment

  • @ref: 8945
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Macrococcus caseolyticus gene for 16S rRNA, partial sequence, strain: ATCC 13548 (= MAFF 911387)D833591478ena69966
20218Macrococcus caseolyticus 16S rRNA geneY157111547ena69966

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Macrococcus caseolyticus DSM 20597GCA_002902665scaffoldncbi69966
66792Macrococcus caseolyticus strain DSM 2059769966.63wgspatric69966
66792Macrococcus caseolyticus strain FDAARGOS_86869966.78completepatric69966
66792Macrococcus caseolyticus DSM 205972838912853draftimg69966

GC content

  • @ref: 8945
  • GC-content: 38.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes92.73no
anaerobicno98.556yes
halophileyes88.899no
spore-formingno83.723no
glucose-utilyes86.685no
thermophileno99.848no
flagellatedno90.941no
motileno86.79no
aerobicyes87.297yes
glucose-fermentno68.58yes

External links

@ref: 8945

culture collection no.: CCUG 15606, DSM 20597, ATCC 13548

straininfo link

  • @ref: 83563
  • straininfo: 92408

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9734040Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov.Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ, Ludwig W, Schleifer KH, Fiedler F, Schubert KInt J Syst Bacteriol10.1099/00207713-48-3-8591998Animals, Base Composition, Base Sequence, Cell Wall/chemistry, DNA, Ribosomal/chemistry, Horses, Micrococcaceae/*classification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Plasmids, RNA, Ribosomal, 16S/genetics, Staphylococcus/*classificationGenetics
Phylogeny25515772Radiation-resistant Macrococcus caseolyticus (A) isolated from radiation-processed semidried prawns.Karani M, Shashidhar R, Kakatkar A, Gautam RK, Sukhi S, Pansare-Godambe L, Bandekar JCan J Microbiol10.1139/cjm-2014-06362015Animals, Crustacea/*microbiology/radiation effects, Fatty Acids/analysis/metabolism, Food Irradiation, Gamma Rays, Phylogeny, Shellfish/*microbiology/radiation effects, Staphylococcaceae/genetics/*isolation & purification/metabolism/*radiation effectsMetabolism
Phylogeny28086066Description of Auricoccus indicus gen. nov., sp. nov., isolated from skin of human ear.Prakash O, Muduli S, Kumar R, Kumari C, Nimonkar Y, Shouche YS, Sharma RInt J Syst Evol Microbiol10.1099/ijsem.0.0017872017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ear/*microbiology, Fatty Acids/chemistry, Gram-Positive Asporogenous Rods/*classification/genetics/isolation & purification, Humans, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Skin/*microbiologyPathogenicity
Phylogeny35156917Macrococcus armenti sp. nov., a novel bacterium isolated from the skin and nasal cavities of healthy pigs and calves.Keller JE, Schwendener S, Overesch G, Perreten VInt J Syst Evol Microbiol10.1099/ijsem.0.0052452022Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, *Nasal Cavity/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Skin/*microbiology, Staphylococcaceae/*classification/isolation & purification, Swine/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8945Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20597)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20597
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
46291Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15606)https://www.ccug.se/strain?id=15606
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83563Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92408.1StrainInfo: A central database for resolving microbial strain identifiers