Name: Macrococcus caseolyticus 235
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14419

Type strain:

Species: Macrococcus caseolyticus

Strain Designation: 235

Culture col. no.: CCUG 15606, DSM 20597, ATCC 13548

Strain history: <- K.H. Schleifer <- ATCC <- A.G. Lochhead, 235 (Micrococcus caseolyticus)

NCBI tax ID(s): 69966 (species)

SI-ID 92408

ATCC 13548, CCUG 15606, DSM 20597, CIP 100755, CCM 3540, KCTC 3582, BCRC 15268, CCRC 15268, NRRL B-14761, CNCTC 5682

Other strains from Macrococcus caseolyticus

M. caseolyticus BT6, CIP 105709, ATCC 51834
M. caseolyticus CIP 100754, ATCC 29750, NCIMB 11374
M. caseolyticus CIP 100846, ATCC 14852, NCDO 749
M. caseolyticus CCUG 28808
M. caseolyticus CCUG 47312
M. caseolyticus CCUG 53809
M. caseolyticus CCUG 60665

Section

Macrococcus caseolyticus 235 is an aerobe, mesophilic animal pathogen of the family Staphylococcaceae.

aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Macrococcus*
	Species	**Macrococcus caseolyticus**
	Full Scientific Name (LPSN)	Macrococcus caseolyticus (Schleifer et al. 1982 ex Evans 1916) Kloos et al. 1998

	Synonym	"Macrococcoides* caseolyticus"*
	Synonym	Staphylococcus caseolyticus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8945]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8945]

Culture medium growth

[Ref.: #8945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8945]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8945]			growth	37 °C
[Ref.: #46291]			growth	26 °C

[Ref.: #8945]	Temperature range	mesophilic
[Ref.: #46291]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46291]

Oxygen tolerance

aerobe

[Ref.: #8945]	Murein short key	A11.03
[Ref.: #8945]	Murein types	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	sucrose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	-	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #68375]		acetoin ChEBI	yes	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	+	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68375]	alkaline phosphatase	-	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API ID32STA
[Ref.: #68375]	urease	-	3.5.1.5	* from API ID32STA

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8945]	6164	-	-	-	-	-	+	-	-	-	+/-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #46291]	Sampling date	1983-10-07
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence D83359 (>99% sequence identity) for Macrococcus from Microbeatlas

Aquatic Samples	930
Soil Samples	1069
Animal Samples	8379
Plant Samples	372
Total Samples	10750

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8945]	Pathogenicity (animal)	yes, in single cases
[Ref.: #8945]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Macrococcus caseolyticus gene for 16S rRNA, partial sequence, strain: ATCC 13548 (= MAFF 911387)	D83359	1478	ENA	69966 tax ID	*
[Ref.: #20218]	Macrococcus caseolyticus 16S rRNA gene	Y15711	1547	ENA	69966 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Macrococcus caseolyticus DSM 20597	GCA_002902665	scaffold	GenBank	69966 tax ID	*
[Ref.: #66792]	Macrococcus caseolyticus strain DSM 20597	69966.63	wgs	PATRIC	69966 tax ID	*
[Ref.: #66792]	Macrococcus caseolyticus strain FDAARGOS_868	69966.78	complete	PATRIC	69966 tax ID	*
[Ref.: #66792]	Macrococcus caseolyticus DSM 20597	2838912853	draft	JGI IMG/M	69966 tax ID	*

[Ref.: #8945]

GC-content

38.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Macrococcus caseolyticus strain FDAARGOS_868 strain Not applicable PATRIC: 69966.78
[Ref.: #69480]	gram-positive	yes	92.73	no
[Ref.: #69480]	anaerobic	no	98.556	yes
[Ref.: #69480]	halophile	yes	88.899	no
[Ref.: #69480]	spore-forming	no	83.723	no
[Ref.: #69480]	glucose-util	yes	86.685	no
[Ref.: #69480]	thermophile	no	99.848	no
[Ref.: #69480]	flagellated	no	90.941	no
[Ref.: #69480]	motile	no	86.79	no
[Ref.: #69480]	aerobic	yes	87.297	yes
[Ref.: #69480]	glucose-ferment	no	68.58	yes

Availability in culture collections External links

[Ref.: #8945]

Culture collection no.

CCUG 15606, DSM 20597, ATCC 13548

[Ref.: #83563]

SI-ID 92408

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Macrococcus armenti sp. nov., a novel bacterium isolated from the skin and nasal cavities of healthy pigs and calves.	Keller JE, Schwendener S, Overesch G, Perreten V	Int J Syst Evol Microbiol	10.1099/ijsem.0.005245	2022	*
Phylogeny	Description of Auricoccus indicus gen. nov., sp. nov., isolated from skin of human ear.	Prakash O, Muduli S, Kumar R, Kumari C, Nimonkar Y, Shouche YS, Sharma R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001787	2017	*
Phylogeny	Radiation-resistant Macrococcus caseolyticus (A) isolated from radiation-processed semidried prawns.	Karani M, Shashidhar R, Kakatkar A, Gautam RK, Sukhi S, Pansare-Godambe L, Bandekar J	Can J Microbiol	10.1139/cjm-2014-0636	2015	*
Phylogeny	Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov.	Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ, Ludwig W, Schleifer KH, Fiedler F, Schubert K	Int J Syst Bacteriol	10.1099/00207713-48-3-859	1998	*

References

#8945

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20597

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#46291 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15606

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83563

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92408.1 )

* These data were automatically processed and therefore are not curated

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Macrococcus caseolyticus strain FDAARGOS_868 strain Not applicable

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