Strain identifier

BacDive ID: 14411

Type strain: Yes

Species: Jeotgalicoccus halotolerans

Strain Designation: YKJ-101, YRJ-101

Strain history: CIP <- 2003, JCM <- Y.H. Park: strain YRJ-101

NCBI tax ID(s): 157227 (species)

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General

@ref: 6866

BacDive-ID: 14411

DSM-Number: 17274

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic

description: Jeotgalicoccus halotolerans YKJ-101 is an obligate aerobe, mesophilic bacterium that was isolated from jeotgal, traditional Korean fermented seafood.

NCBI tax id

  • NCBI tax id: 157227
  • Matching level: species

strain history

@refhistory
6866<- JCM <- Y.-H.Park, YKJ-101
67770Y.-H. Park YKJ-101.
119826CIP <- 2003, JCM <- Y.H. Park: strain YRJ-101

doi: 10.13145/bacdive14411.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Jeotgalicoccus
  • species: Jeotgalicoccus halotolerans
  • full scientific name: Jeotgalicoccus halotolerans Yoon et al. 2003

@ref: 6866

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Jeotgalicoccus

species: Jeotgalicoccus halotolerans

full scientific name: Jeotgalicoccus halotolerans Yoon et al. 2003

strain designation: YKJ-101, YRJ-101

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.941
69480100positive
119826nopositivecoccus-shaped

colony morphology

  • @ref: 119826

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6866BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33184Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119826CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6866positivegrowth28mesophilic
33184positivegrowth30mesophilic
67770positivegrowth30mesophilic
119826positivegrowth10-41
119826nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119826
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.968

halophily

  • @ref: 119826
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
119826606565hippurate-hydrolysis
11982617632nitrate-reduction
11982616301nitrite-reduction

metabolite production

  • @ref: 119826
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 119826
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
119826oxidase+
119826beta-galactosidase-3.2.1.23
119826alcohol dehydrogenase-1.1.1.1
119826gelatinase-
119826amylase-
119826DNase-
119826caseinase-3.4.21.50
119826catalase+1.11.1.6
119826tween esterase-
119826gamma-glutamyltransferase+2.3.2.2
119826lecithinase-
119826lipase-
119826lysine decarboxylase-4.1.1.18
119826ornithine decarboxylase-4.1.1.17
119826phenylalanine ammonia-lyase-4.3.1.24
119826protease-
119826urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119826--+--++--+----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
6866jeotgal, traditional Korean fermented seafoodRepublic of KoreaKORAsia
57843Jeotgal (traditional Korean fermented seafood)
67770Jeotgal, traditional Korean fermented seafoodRepublic of KoreaKORAsia
119826JeotgalRepublic of KoreaKORAsiaTaejon1999

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Engineered#Food production#Fermented

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
68661Risk group (German classification)
1198261Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6866
  • description: Jeotgalibacillus halotolerans 16S ribosomal RNA gene, partial sequence
  • accession: AY028925
  • length: 1506
  • database: ena
  • NCBI tax ID: 157227

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jeotgalicoccus halotolerans strain DSM 17274157227.3wgspatric157227
66792Jeotgalicoccus halotolerans DSM 172742770939612draftimg157227
67770Jeotgalicoccus halotolerans DSM 17274GCA_003387165scaffoldncbi157227

GC content

@refGC-contentmethod
686642
6777042high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes61no
motileno88.973no
gram-positiveyes89.799no
anaerobicno99.162no
aerobicyes95.011no
halophileyes98.051no
spore-formingno88.109no
glucose-utilyes81.866no
flagellatedno95.91no
thermophileno99.832yes
glucose-fermentno72.601no

External links

@ref: 6866

culture collection no.: DSM 17274, CCM 7135, CCUG 47728, CIP 107958, JCM 11198, KCCM 41448, CGMCC 1.6779

straininfo link

  • @ref: 83555
  • straininfo: 100701

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12710632Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal.Yoon JH, Lee KC, Weiss N, Kang KH, Park YHInt J Syst Evol Microbiol10.1099/ijs.0.02132-02003Fatty Acids/analysis, Fermentation, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Seafood/*microbiology, Sequence Analysis, DNA, Staphylococcaceae/*classification/genetics/isolation & purification/*physiologyGenetics
Phylogeny17329798Salinicoccus jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.Aslam Z, Lim JH, Im WT, Yasir M, Chung YR, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.64586-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fermentation, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Staphylococcaceae/*classification/genetics/isolation & purificationGenetics
Phylogeny19667366Jeotgalicoccus huakuii sp. nov., a halotolerant bacterium isolated from seaside soil.Guo XQ, Li R, Zheng LQ, Lin DQ, Sun JQ, Li SP, Li WJ, Jiang JDInt J Syst Evol Microbiol10.1099/ijs.0.013623-02009Base Composition, China, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/chemistry/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Seawater, *Soil Microbiology, Staphylococcaceae/*classification/genetics/isolation & purification/metabolismGenetics
Phylogeny20207804Jeotgalicoccus coquinae sp. nov. and Jeotgalicoccus aerolatus sp. nov., isolated from poultry houses.Martin E, Klug K, Frischmann A, Busse HJ, Kampfer P, Jackel UInt J Syst Evol Microbiol10.1099/ijs.0.021675-02010Animals, Bacterial Typing Techniques, Cardiolipins/analysis, DNA, Bacterial/genetics, Housing, Animal, Molecular Sequence Data, Phenotype, Phosphatidylglycerols/analysis, *Phylogeny, Poultry/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Staphylococcaceae/*classification/isolation & purification, Vitamin K 2/analysisGenetics
Phylogeny20802063Jeotgalicoccus halophilus sp. nov., isolated from salt lakes.Liu WY, Jiang LL, Guo CJ, Yang SSInt J Syst Evol Microbiol10.1099/ijs.0.022251-02010Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Staphylococcaceae/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
6866Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17274)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17274
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33184Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5526
57843Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47728)https://www.ccug.se/strain?id=47728
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83555Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100701.1StrainInfo: A central database for resolving microbial strain identifiers
119826Curators of the CIPCollection of Institut Pasteur (CIP 107958)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107958