Strain identifier
BacDive ID: 14407
Type strain: 
Species: Pullulanibacillus naganoensis
Strain Designation: D 39
Strain history: <- L. Sly, ACM
NCBI tax ID(s): 52763 (species)
version 8.1 (current version)
General
@ref: 3842
BacDive-ID: 14407
DSM-Number: 10191
keywords: 16S sequence, Bacteria, mesophilic
description: Pullulanibacillus naganoensis D 39 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 52763
- Matching level: species
strain history
- @ref: 3842
- history: <- L. Sly, ACM
doi: 10.13145/bacdive14407.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Sporolactobacillaceae
- genus: Pullulanibacillus
- species: Pullulanibacillus naganoensis
- full scientific name: Pullulanibacillus naganoensis (Tomimura et al. 1990) Hatayama et al. 2006
synonyms
- @ref: 20215
- synonym: Bacillus naganoensis
@ref: 3842
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Sporolactobacillaceae
genus: Pullulanibacillus
species: Pullulanibacillus naganoensis
full scientific name: Pullulanibacillus naganoensis (Tomimura et al. 1990) Hatayama et al. 2006
strain designation: D 39
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3842
- name: ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402)
- growth: yes
- link: https://mediadive.dsmz.de/medium/402
- composition: Name: ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402) Composition: Agar 15.0 g/l Glucose 5.0 g/l KH2PO4 3.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water
culture temp
- @ref: 3842
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 3842
- compound: pullulanase
Isolation, sampling and environmental information
isolation
- @ref: 3842
- sample type: soil
- geographic location: Nagano prefecture, Kiso district
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_106584.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_18321;97_22616;98_43091;99_106584&stattab=map
- Last taxonomy: Pullulanibacillus naganoensis
- 16S sequence: AB021193
- Sequence Identity:
- Total samples: 306
- soil counts: 290
- aquatic counts: 10
- animal counts: 5
- plant counts: 1
Safety information
risk assessment
- @ref: 3842
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Bacillus naganoensis gene for 16S ribosomal RNA | AB021193 | 1540 | ena | 52763 |
| 20218 | Bacillus naganoensis genes for 16S rRNA, ITS1, 23S rRNA, partial and complete sequence, strain: DSM 10191 | AB231790 | 443 | ena | 52763 |
| 20218 | Bacillus naganoensis genes for 16S rRNA, ITS2, 23S rRNA, partial and complete sequence, strain: DSM 10191 | AB231791 | 379 | ena | 52763 |
GC content
- @ref: 3842
- GC-content: 45
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 3842
culture collection no.: DSM 10191, ACM 5005, ATCC 53909, LMG 12887
straininfo link
- @ref: 83551
- straininfo: 7355
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 2223604 | Description of Bacillus naganoensis sp. nov. | Tomimura E, Zeman NW, Frankiewicz JR, Teague WM | Int J Syst Bacteriol | 10.1099/00207713-40-2-123 | 1990 | Bacillus/*classification/enzymology/genetics, DNA, Bacterial/analysis, Enzyme Stability, Fatty Acids/analysis, Glycoside Hydrolases/biosynthesis, Hydrogen-Ion Concentration, Soil Microbiology, Temperature | Phylogeny |
| Phylogeny | 22368171 | Pullulanibacillus uraniitolerans sp. nov., an acidophilic, U(VI)-resistant species isolated from an acid uranium mill tailing effluent and emended description of the genus Pullulanibacillus. | Pereira SG, Albuquerque L, Nobre MF, Tiago I, Verissimo A, Pereira A, da Costa MS | Int J Syst Evol Microbiol | 10.1099/ijs.0.040923-0 | 2012 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification, Mining, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Uranium, *Water Microbiology | Genetics |
| Phylogeny | 25858244 | Pullulanibacillus pueri sp. nov., isolated from Pu'er tea. | Niu L, Tang T, Song L, Xiong M, Tian J, Zhang K, Hu X, Zhu D | Int J Syst Evol Microbiol | 10.1099/ijs.0.000239 | 2015 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tea/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26843374 | Terrilactibacillus laevilacticus gen. nov., sp. nov., isolated from soil. | Prasirtsak B, Thongchul N, Tolieng V, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000954 | 2016 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 27515245 | Scopulibacillus daqui sp. nov., a thermophilic bacterium isolated from high temperature daqu. | Yao S, Zhai L, Xin C, Liu Y, Xu L, Zhang X, Zhao T, Zhang L, Cheng C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001417 | 2016 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Hot Temperature, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Vitamin K 2/chemistry | Biotechnology |
| Phylogeny | 29789976 | Scopulibacillus cellulosilyticus sp. nov., a cellulose-degrading bacterium isolated from tea. | Yan ZF, Lin P, Li CT, Kook M, Yi TH | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1101-1 | 2018 | Bacteria/classification/genetics/*metabolism, Cellulose/*metabolism, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Tea/*microbiology | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3842 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10191) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10191 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 83551 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7355.1 | StrainInfo: A central database for resolving microbial strain identifiers |