Strain identifier

BacDive ID: 143850

Type strain: No

Species: Campylobacter mucosalis

NCBI tax ID(s): 1032067 (strain), 202 (species)

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General

@ref: 47428

BacDive-ID: 143850

keywords: genome sequence, Bacteria, motile

description: Campylobacter mucosalis CCUG 21559 is a motile bacterium that was isolated from Porcine,necrotic colitis.

NCBI tax id

NCBI tax idMatching level
1032067strain
202species

doi: 10.13145/bacdive143850.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter mucosalis
  • full scientific name: Campylobacter mucosalis (Lawson et al. 1981 ex Lawson and Rowland 1974) Roop et al. 1985

  • synonyms

    • @ref: 20215
    • synonym: Campylobacter sputorum subsp. mucosalis

@ref: 47428

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter mucosalis

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.598
6948099.994negative

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.985

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate-reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate+assimilation
6837330089acetate+assimilation
6837317272propionate-assimilation
6837325115malate+assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase-
68373urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47428C12:07.812
    47428C14:010.614
    47428C16:028.716
    47428C18:00.618
    47428C13:0 ISO 2OH0.513.814
    47428C14:0 3OH/C16:1 ISO I6.415.485
    47428C16:0 3OH3.517.52
    47428C16:1 ω7c19.715.819
    47428C18:1 ω7c /12t/9t19.417.824
    47428C18:2 ω6,9c/C18:0 ANTE2.317.724
    47428unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47428--------+++-+--+-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 47428
  • sample type: Porcine,necrotic colitis
  • sampling date: 1973
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Infection#Disease

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter mucosalis CCUG 21559GCA_004803775completencbi1032067
66792Campylobacter mucosalis CCUG 215591032067.3completepatric1032067

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno86no
motileyes89.118no
flagellatedyes61.402no
gram-positiveno98.72no
anaerobicyes52.559no
aerobicno97.558no
halophileno69.975no
spore-formingno94.843no
thermophileno90.711no
glucose-utilno86.649no
glucose-fermentno87.77no

External links

@ref: 47428

culture collection no.: CCUG 21559, NCTC 11418, LMG 8265

straininfo link

  • @ref: 99127
  • straininfo: 92187

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47428Curators of the CCUGhttps://www.ccug.se/strain?id=21559Culture Collection University of Gothenburg (CCUG) (CCUG 21559)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
99127Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID92187.1