Strain identifier

BacDive ID: 143850

Type strain: No

Species: Campylobacter mucosalis

NCBI tax ID(s): 1032067 (strain), 202 (species)

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General

@ref: 47428

BacDive-ID: 143850

keywords: genome sequence, Bacteria, Gram-negative

description: Campylobacter mucosalis CCUG 21559 is a Gram-negative bacterium that was isolated from Porcine,necrotic colitis.

NCBI tax id

NCBI tax idMatching level
202species
1032067strain

doi: 10.13145/bacdive143850.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter mucosalis
  • full scientific name: Campylobacter mucosalis (Lawson et al. 1981 ex Lawson and Rowland 1974) Roop et al. 1985

  • synonyms

    • @ref: 20215
    • synonym: Campylobacter sputorum subsp. mucosalis

@ref: 47428

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter mucosalis

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 95.794

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 92.098

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316947citrate-assimilation
6837317272propionate-assimilation
6837325115malate+assimilation
6837330031succinate+assimilation
6837317634D-glucose-assimilation
6837378019triphenyltetrazolium chloride-reduction
6837317632nitrate-reduction
6837330089acetate+assimilation
68373606565hippurate-hydrolysis
6837316199urea-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373gamma-glutamyltransferase-2.3.2.2
68373esterase-
68373urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47428C12:07.812
    47428C14:010.614
    47428C16:028.716
    47428C18:00.618
    47428C13:0 ISO 2OH0.513.814
    47428C14:0 3OH/C16:1 ISO I6.415.485
    47428C16:0 3OH3.517.52
    47428C16:1 ω7c19.715.819
    47428C18:1 ω7c /12t/9t19.417.824
    47428C18:2 ω6,9c/C18:0 ANTE2.317.724
    47428unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47428--------+++-+--+-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 47428
  • sample type: Porcine,necrotic colitis
  • sampling date: 1973
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Infection#Disease

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter mucosalis CCUG 21559GCA_004803775completencbi1032067
66792Campylobacter mucosalis CCUG 215591032067.3completepatric1032067

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno86no
69480gram-positivegram-positivePositive reaction to Gram-stainingno95.794no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no59.963no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no88.727no
69480spore-formingspore-formingAbility to form endo- or exosporesno92.098no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno88.812no
69480flagellatedmotile2+Ability to perform flagellated movementyes60.214no

External links

@ref: 47428

culture collection no.: CCUG 21559, NCTC 11418, LMG 8265

straininfo link

  • @ref: 99127
  • straininfo: 92187

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47428Curators of the CCUGhttps://www.ccug.se/strain?id=21559Culture Collection University of Gothenburg (CCUG) (CCUG 21559)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
99127Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID92187.1