Strain identifier

BacDive ID: 142950

Type strain: No

Species: Vibrio vulnificus

NCBI tax ID(s): 672 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 46367

BacDive-ID: 142950

keywords: Bacteria

description: Vibrio vulnificus CCUG 15886 is a bacterium that was isolated from Human leg ulcer.

NCBI tax id

  • NCBI tax id: 672
  • Matching level: species

doi: 10.13145/bacdive142950.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio vulnificus
  • full scientific name: Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980
  • synonyms

    • @ref: 20215
    • synonym: Beneckea vulnifica

@ref: 46367

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio vulnificus

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol-builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46367---------+++----+-++-----+--+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 46367
  • sample type: Human leg ulcer
  • geographic location: Wisconsin
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Limb#Leg
#Infection#Patient
#Host Body-Site#Other#Abscess

External links

@ref: 46367

culture collection no.: CCUG 15886, ATCC 33815

straininfo link

  • @ref: 98369
  • straininfo: 40704

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9556752Molecular typing of Vibrio vulnificus isolates by random amplified polymorphic DNA (RAPD) analysis.Ryang DW, Cho SW, Shin MG, Shin JH, Suh SPJpn J Med Sci Biol10.7883/yoken1952.50.1131997*Random Amplified Polymorphic DNA Technique, Serotyping, Vibrio/*classification/genetics
Biotechnology21357428Detecting potentially virulent Vibrio vulnificus strains in raw oysters by quantitative loop-mediated isothermal amplification.Han F, Wang F, Ge BAppl Environ Microbiol10.1128/AEM.02992-102011Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques/*methods, Biomarkers, Food Microbiology, Limit of Detection, Ostreidae/*microbiology, Sensitivity and Specificity, Sequence Alignment, Vibrio vulnificus/genetics/*isolation & purification/pathogenicity, VirulenceEnzymology
30263610Effects of varying concentrations of sodium chloride and acidic conditions on the behavior of Vibrio parahaemolyticus and Vibrio vulnificus cold-starved in artificial sea water microcosms.Yoon JH, Bae YM, Lee SYFood Sci Biotechnol10.1007/s10068-017-0105-32017

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
46367Curators of the CCUGhttps://www.ccug.se/strain?id=15886Culture Collection University of Gothenburg (CCUG) (CCUG 15886)
68374Automatically annotated from API ID32E
98369Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID40704.1