Strain identifier
version 8.1 (current version)
General
@ref: 46367
BacDive-ID: 142950
keywords: Bacteria
description: Vibrio vulnificus CCUG 15886 is a bacterium that was isolated from Human leg ulcer.
NCBI tax id
- NCBI tax id: 672
- Matching level: species
doi: 10.13145/bacdive142950.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio vulnificus
- full scientific name: Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980
synonyms
- @ref: 20215
- synonym: Beneckea vulnifica
@ref: 46367
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio vulnificus
type strain: no
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | + | builds acid from |
68374 | 17306 | maltose | + | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | + | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | + | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | + | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46367 | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | + | - | + | + | - | - | - | - | - | + | - | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 46367
- sample type: Human leg ulcer
- geographic location: Wisconsin
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Limb | #Leg |
#Infection | #Patient | |
#Host Body-Site | #Other | #Abscess |
External links
@ref: 46367
culture collection no.: CCUG 15886, ATCC 33815
straininfo link
- @ref: 98369
- straininfo: 40704
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9556752 | Molecular typing of Vibrio vulnificus isolates by random amplified polymorphic DNA (RAPD) analysis. | Ryang DW, Cho SW, Shin MG, Shin JH, Suh SP | Jpn J Med Sci Biol | 10.7883/yoken1952.50.113 | 1997 | *Random Amplified Polymorphic DNA Technique, Serotyping, Vibrio/*classification/genetics | |
Biotechnology | 21357428 | Detecting potentially virulent Vibrio vulnificus strains in raw oysters by quantitative loop-mediated isothermal amplification. | Han F, Wang F, Ge B | Appl Environ Microbiol | 10.1128/AEM.02992-10 | 2011 | Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques/*methods, Biomarkers, Food Microbiology, Limit of Detection, Ostreidae/*microbiology, Sensitivity and Specificity, Sequence Alignment, Vibrio vulnificus/genetics/*isolation & purification/pathogenicity, Virulence | Enzymology |
30263610 | Effects of varying concentrations of sodium chloride and acidic conditions on the behavior of Vibrio parahaemolyticus and Vibrio vulnificus cold-starved in artificial sea water microcosms. | Yoon JH, Bae YM, Lee SY | Food Sci Biotechnol | 10.1007/s10068-017-0105-3 | 2017 |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
46367 | Curators of the CCUG | https://www.ccug.se/strain?id=15886 | Culture Collection University of Gothenburg (CCUG) (CCUG 15886) | |
68374 | Automatically annotated from API ID32E | |||
98369 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID40704.1 |