Strain identifier
BacDive ID: 14272
Type strain: 
Species: Sphingomonas laterariae
Strain history: <- R. Lal, Univ. Delhi, Dept. Zoology, India; LNB2
NCBI tax ID(s): 861865 (species)
version 8.1 (current version)
General
@ref: 18035
BacDive-ID: 14272
DSM-Number: 25432
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Sphingomonas laterariae DSM 25432 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from HCH-contaminated dump site.
NCBI tax id
- NCBI tax id: 861865
- Matching level: species
strain history
- @ref: 18035
- history: <- R. Lal, Univ. Delhi, Dept. Zoology, India; LNB2
doi: 10.13145/bacdive14272.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas laterariae
- full scientific name: Sphingomonas laterariae Kaur et al. 2012
@ref: 18035
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas laterariae
full scientific name: Sphingomonas laterariae Kaur et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 30380
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.55 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30380
- production: yes
Culture and growth conditions
culture temp
- @ref: 30380
- growth: positive
- type: optimum
- temperature: 28
- range: mesophilic
culture pH
- @ref: 30380
- ability: positive
- type: growth
- pH: 06-09
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30380
- oxygen tolerance: aerobe
halophily
- @ref: 30380
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-3 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30380 | 29016 | arginine | + | carbon source |
| 30380 | 28260 | galactose | + | carbon source |
| 30380 | 17234 | glucose | + | carbon source |
| 30380 | 37684 | mannose | + | carbon source |
| 30380 | 17822 | serine | + | carbon source |
| 30380 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30380 | catalase | + | 1.11.1.6 |
| 30380 | cytochrome oxidase | + | 1.9.3.1 |
| 30380 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 18035
- sample type: HCH-contaminated dump site
- geographic location: Uttar Pradesh, Ummari village near Lucknow (27° 0' 25.1'' N 81° 8' 54.8'' E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 27.007
- longitude: 81.1486
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Built environment |
| #Engineered | #Contamination |
Safety information
risk assessment
- @ref: 18035
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18035
- description: Sphingomonas laterariae strain LNB2 16S ribosomal RNA gene, partial sequence
- accession: HM159118
- length: 1405
- database: ena
- NCBI tax ID: 861865
GC content
| @ref | GC-content | method |
|---|---|---|
| 18035 | 61.05 | fluorimetric |
| 30380 | 61 |
External links
@ref: 18035
culture collection no.: DSM 25432, CCM 7880, MTCC 10873, LNB 2
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22247216 | Sphingomonas laterariae sp. nov., isolated from a hexachlorocyclohexane-contaminated dump site. | Kaur J, Kaur J, Niharika N, Lal R | Int J Syst Evol Microbiol | 10.1099/ijs.0.034686-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Hexachlorocyclohexane/*analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/analysis, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/analysis | Genetics |
| Phylogeny | 26296342 | Sphingomonas vulcanisoli sp. nov., isolated from soil of a lava forest. | Lee KC, Kim KK, Kim JS, Kim DS, Ko SH, Yang SH, Kim SG, Lee JS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000414 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Genetics |
| Phylogeny | 27054358 | Sphingomonas faucium sp. nov., isolated from canyon soil. | Liu D, Jin X, Sun X, Song Y, Feng L, Wang G, Li M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001064 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 27469025 | Sphingomonas prati sp. nov., isolated from alpine meadow soil. | Manandhar P, Zhang G, Hu Y, Lama A, Gao F, Gu Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001346 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Grassland, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sphingomonas/*classification/genetics/isolation & purification, Tibet, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 27506439 | Sphingomonas naphthae sp. nov., isolated from oil-contaminated soil. | Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001400 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 28755311 | Sphingomonas montana sp. nov., isolated from a soil sample from the Tanggula Mountain in the Qinghai Tibetan Plateau. | Manandhar P, Zhang G, Lama A, Liu F, Hu Y | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0915-6 | 2017 | Computational Biology/methods, *Environment, Genome, Bacterial, Genomics/methods, Metabolomics/methods, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Sphingomonas/chemistry/*classification/*genetics/isolation & purification, Tibet, Whole Genome Sequencing | Genetics |
| Phylogeny | 29116039 | Sphingomonas colocasiae sp. nov., isolated from taro (Colocasia esculanta). | Lin SY, Hameed A, Hsu YH, Liu YC, Hung MH, Lai WA, Young CC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002471 | 2017 | Bacterial Typing Techniques, Base Composition, Colocasia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Taiwan, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 18035 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25432) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25432 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 30380 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26719 | 28776041 | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 |