Sphingomonas laterariae (DSM 25432, CCM 7880, MTCC 10873)

Name: Sphingomonas laterariae (DSM 25432, CCM 7880, MTCC 10873)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14272

Type strain

Culture col. no. DSM 25432 CCM 7880 MTCC 10873 LNB 2

NCBI tax ID(s) 861865

Special Collections DSMZ Literature strains

Sphingomonas laterariae DSM 25432 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from HCH-contaminated dump site.

Gram-negative rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

Culture Collection Numbers

DSM 25432 CCM 7880 MTCC 10873 LNB 2

@ref 20215

Last LPSN update 2025-12-16 09:50:18

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas laterariae

Full scientific name Sphingomonas laterariae Kaur et al. 2012

Synonyms (1)

Edaphosphingomonas laterariae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30380	negative	1.5 µm	0.55 µm	rod-shaped

Pigmentation

30380

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30380	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30380	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

30380

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30380	NaCl	positive	growth	0-3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30380	29016 ChEBI	arginine	+	carbon source
30380	28260 ChEBI	galactose	+	carbon source
30380	17234 ChEBI	glucose	+	carbon source
30380	37684 ChEBI	mannose	+	carbon source
30380	17632 ChEBI	nitrate	+	reduction
30380	17822 ChEBI	serine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30380	catalase	+	1.11.1.6
30380	cytochrome oxidase	+	1.9.3.1
30380	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	Entner Doudoroff pathway	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	quinate degradation	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	tryptophan metabolism	78.95	30 of 38
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	methionine metabolism	73.08	19 of 26
66794	vitamin B6 metabolism	72.73	8 of 11
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	alanine metabolism	68.97	20 of 29
66794	acetoin degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	octane oxidation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	phenol degradation	65	13 of 20
66794	bile acid biosynthesis, neutral pathway	64.71	11 of 17
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	non-pathway related	60.53	23 of 38
66794	3-chlorocatechol degradation	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	arginine metabolism	58.33	14 of 24
66794	lipid metabolism	58.06	18 of 31
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	degradation of sugar alcohols	56.25	9 of 16
66794	lipid A biosynthesis	55.56	5 of 9
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	degradation of hexoses	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	urea cycle	53.85	7 of 13
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	selenocysteine biosynthesis	50	3 of 6
66794	ketogluconate metabolism	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	myo-inositol biosynthesis	50	5 of 10
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	polyamine pathway	43.48	10 of 23
66794	oxidative phosphorylation	42.86	39 of 91
66794	degradation of pentoses	42.86	12 of 28
66794	vitamin B12 metabolism	41.18	14 of 34
66794	glycogen metabolism	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	d-xylose degradation	36.36	4 of 11
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	starch degradation	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	degradation of sugar acids	24	6 of 25

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Built environment
#Engineered	#Contamination

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
18035	HCH-contaminated dump site	Uttar Pradesh, Ummari village near Lucknow (27° 0' 25.1'' N 81° 8' 54.8'' E)	India	IND	Asia	27.007	81.1486 27.007/81.1486

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18035	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18035	Sphingomonas laterariae strain LNB2 16S ribosomal RNA gene, partial sequence	HM159118	1405		861865

GC content

@ref	GC-content (mol%)	Method
18035	61.05	fluorimetric
30380	61

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas colocasiae sp. nov., isolated from taro (Colocasia esculanta).	Lin SY, Hameed A, Hsu YH, Liu YC, Hung MH, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002471	2017
Phylogeny	Sphingomonas montana sp. nov., isolated from a soil sample from the Tanggula Mountain in the Qinghai Tibetan Plateau.	Manandhar P, Zhang G, Lama A, Liu F, Hu Y	Antonie Van Leeuwenhoek	10.1007/s10482-017-0915-6	2017
Phylogeny	Sphingomonas naphthae sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001400	2016
Phylogeny	Sphingomonas prati sp. nov., isolated from alpine meadow soil.	Manandhar P, Zhang G, Hu Y, Lama A, Gao F, Gu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001346	2016
Phylogeny	Sphingomonas faucium sp. nov., isolated from canyon soil.	Liu D, Jin X, Sun X, Song Y, Feng L, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001064	2016
Phylogeny	Sphingomonas vulcanisoli sp. nov., isolated from soil of a lava forest.	Lee KC, Kim KK, Kim JS, Kim DS, Ko SH, Yang SH, Kim SG, Lee JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000414	2015
Phylogeny	Sphingomonas laterariae sp. nov., isolated from a hexachlorocyclohexane-contaminated dump site.	Kaur J, Kaur J, Niharika N, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.034686-0	2012

References

#18035	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25432
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30380	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26719 (see below)
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

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Sphingomonas laterariae (DSM 25432, CCM 7880, MTCC 10873)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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