Strain identifier
version 8.1 (current version)
General
@ref: 44867
BacDive-ID: 141738
keywords: genome sequence, Bacteria
description: Corynebacterium diphtheriae CCUG 5865 is a bacterium that was isolated from Nose swab.
NCBI tax id
- NCBI tax id: 1717
- Matching level: species
doi: 10.13145/bacdive141738.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium diphtheriae
- full scientific name: Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus diphtheriae
@ref: 44867
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium diphtheriae
type strain: no
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | + | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | - | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | - | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | + | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | + | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44867 C14:0 1.9 14 44867 C15:0 8.6 15 44867 C16:0 33.9 16 44867 C18:0 2.7 18 44867 C15:1 ω6c 3 14.856 44867 C16:1 ω7c 32.1 15.819 44867 C17:1 ω8c 1.4 16.792 44867 C18:1 ω9c 5.6 17.769 44867 C18:2 ω6,9c/C18:0 ANTE 10.9 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT | GLU |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44867 | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | + | - | - | - | + | |
44867 | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | + | + |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44867 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 44867
- sample type: Nose swab
- sampling date: 1963
- geographic location: London
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Organ | #Nose |
#Infection | #Patient | #Swab |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Corynebacterium diphtheriae bv. belfanti strain CCUG 5865 | 2014537.3 | wgs | patric | 2014537 |
66792 | Corynebacterium diphtheriae strain CHUV2995 | 1717.441 | complete | patric | 1717 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.842 | no |
gram-positive | yes | 90.812 | no |
anaerobic | no | 96.301 | no |
aerobic | no | 85.343 | no |
halophile | yes | 64.878 | no |
spore-forming | no | 93.967 | no |
glucose-util | yes | 87.892 | no |
flagellated | no | 97.355 | no |
thermophile | no | 96.283 | no |
glucose-ferment | yes | 75.449 | no |
External links
@ref: 44867
culture collection no.: CCUG 5865, NCTC 10356
straininfo link
- @ref: 97369
- straininfo: 53089
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 18463592 | Antimicrobial and antioxidative activities of bioactive constituents from Hydnophytum formicarum Jack. | Prachayasittikul S, Buraparuangsang P, Worachartcheewan A, Isarankura-Na-Ayudhya C, Ruchirawat S, Prachayasittikul V | Molecules | 10.3390/molecules13040904 | 2008 | Animals, Anti-Infective Agents/chemistry/isolation & purification/*pharmacology, Antioxidants/chemistry/isolation & purification/*pharmacology, Bacteria/drug effects, Cell Death/drug effects, Cell Extracts, Cell Line, Tumor, Free Radical Scavengers/pharmacology, Microbial Sensitivity Tests, Plant Extracts/*pharmacology, Rubiaceae/*chemistry, Superoxide Dismutase/metabolism | Phylogeny |
Pathogenicity | 19255544 | Bioactive metabolites from Spilanthes acmella Murr. | Prachayasittikul S, Suphapong S, Worachartcheewan A, Lawung R, Ruchirawat S, Prachayasittikul V | Molecules | 10.3390/molecules14020850 | 2009 | Animals, Anti-Infective Agents/chemistry/pharmacology, Antioxidants/chemistry, Asteraceae/*chemistry, Bacteria/drug effects, Cell Line, Medicine, Traditional, Microbial Sensitivity Tests, Molecular Structure, *Plant Extracts/chemistry/pharmacology, Plants, Medicinal/*chemistry, Saccharomyces cerevisiae/drug effects | |
Pathogenicity | 21598618 | [Micro technologies in express diagnostics of toxigenic Corynebacterium diphtheriae strains]. | Kraeva LA, Zimina TM, Tseneva GIa, Solov'ev AV | Zh Mikrobiol Epidemiol Immunobiol | 2011 | Antigen-Antibody Complex/immunology, Antitoxins/blood/immunology, Bacterial Proteins/*analysis, Corynebacterium diphtheriae/pathogenicity, Diphtheria/blood/*diagnosis/immunology/microbiology, Diphtheria Toxin/*analysis, Hemagglutination Tests, High-Throughput Screening Assays/instrumentation/*methods, Humans, Lab-On-A-Chip Devices, Microchip Analytical Procedures/*methods, Microspheres, Polymerase Chain Reaction, Reference Standards, Sensitivity and Specificity | ||
27857661 | Bioactive 4-hydroxycinnamide and bioactivities of Polyalthia cerasoides. | Treeratanapiboon L, Worachartcheewan A, Suksrichavalit T, Kiatfuengfoo R, Prachayasittikul S, Ruchirawat S, Prachayasittikul V | EXCLI J | 2011 | ||||
29255382 | New bioactive triterpenoids and antimalarial activity of Diospyros rubra Lec. | Prachayasittikul S, Saraban P, Cherdtrakulkiat R, Ruchirawat S, Prachayasittikul V | EXCLI J | 2010 | ||||
Phylogeny | 30174653 | Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphtheriae Subsp. lausannense Subsp. nov. | Tagini F, Pillonel T, Croxatto A, Bertelli C, Koutsokera A, Lovis A, Greub G | Front Microbiol | 10.3389/fmicb.2018.01743 | 2018 |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
44867 | Curators of the CCUG | https://www.ccug.se/strain?id=5865 | Culture Collection University of Gothenburg (CCUG) (CCUG 5865) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68379 | Automatically annotated from API Coryne | |||
68381 | Automatically annotated from API rID32STR | |||
97369 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID53089.1 |