Strain identifier

BacDive ID: 141639

Type strain: Yes

Species: Clostridium tetani

NCBI tax ID(s): 1513 (species)

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General

@ref: 44724

BacDive-ID: 141639

keywords: genome sequence, Bacteria, anaerobe, mesophilic

description: Clostridium tetani CCUG 4220 is an anaerobe, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 1513
  • Matching level: species

doi: 10.13145/bacdive141639.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium tetani
  • full scientific name: Clostridium tetani (Flügge 1886) Bergey et al. 1923 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus tetani

@ref: 44724

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium tetani

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 44724
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 44724
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
44724-----------------------------

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium tetani ATCC 19406GCA_000762305scaffoldncbi1513
66792Clostridium tetani ATCC 194061513.25wgspatric1513
66792Clostridium tetani strain ATCC 194061513.39wgspatric1513
66792Clostridium tetani ATCC 194062585428146draftimg1513
66792Clostridium tetani ATCC 194062617271309draftimg1513
66792Clostridium tetani ATCC 19406GCA_900167265scaffoldncbi1513

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes81.647no
flagellatedno50.713no
gram-positiveyes75.361no
anaerobicyes99.217yes
aerobicno97.289yes
halophileno79.856no
spore-formingyes95.804no
glucose-utilyes88.067no
thermophileno93.523yes
glucose-fermentyes57.23no

External links

@ref: 44724

culture collection no.: CCUG 4220, ATCC 19406, NCTC 279

straininfo link

  • @ref: 97274
  • straininfo: 36974

literature

  • topic: Phylogeny
  • Pubmed-ID: 390318
  • title: The flagellar protein of Clostridium tetani.
  • authors: Betts B, Joys TM
  • journal: Microbios
  • year: 1978
  • mesh: Amino Acid Sequence, Amino Acids/analysis, Anaerobiosis, Bacterial Proteins/*analysis, Carbohydrates/analysis, Clostridium tetani/*analysis, Flagella/analysis, Flagellin/*analysis, Species Specificity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44724Curators of the CCUGhttps://www.ccug.se/strain?id=4220Culture Collection University of Gothenburg (CCUG) (CCUG 4220)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
97274Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID36974.1