Strain identifier

BacDive ID: 14121

Type strain: No

Species: Sphingobacterium multivorum

Strain Designation: 65-80

Variant: Isotype of BacDive ID 14120

Strain history: CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 65-80 <- NCTC <- 1973, R.E. Weaver, CDC: strain B3159, Flavobacterium multivorum

NCBI tax ID(s): 28454 (species)

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General

@ref: 5942

BacDive-ID: 14121

DSM-Number: 15469

keywords: genome sequence, Bacteria, obligate aerobe, Gram-negative

description: Sphingobacterium multivorum 65-80 is an obligate aerobe, Gram-negative bacterium of the family Sphingobacteriaceae.

NCBI tax id

  • NCBI tax id: 28454
  • Matching level: species

strain history

@refhistory
5942<- H. Schedletzky <- NCTC
121176CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 65-80 <- NCTC <- 1973, R.E. Weaver, CDC: strain B3159, Flavobacterium multivorum

doi: 10.13145/bacdive14121.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Sphingobacterium
  • species: Sphingobacterium multivorum
  • full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983

  • synonyms

    • @ref: 20215
    • synonym: Flavobacterium multivorum

@ref: 5942

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Sphingobacterium

species: Sphingobacterium multivorum

full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983 emend. Hahnke et al. 2016

strain designation: 65-80

variant: Isotype of BacDive ID 14120

type strain: no

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
121176negativerod-shapedno
69480negative97.604

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5942NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38426MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121176CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
121176CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
5942positivegrowth30
38426positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 121176
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12117617632nitrate-reduction
12117616301nitrite-reduction

metabolite production

  • @ref: 121176
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
121176oxidase+
121176catalase+1.11.1.6
121176urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121176-+++-++-+-+++--+++++

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
38426New JerseyUSAUSANorth America
121176New JerseyUnited States of AmericaUSANorth AmericaBlood

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
59422Risk group (German classification)
1211761Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingobacterium multivorum NCTC11034GCA_900457115contigncbi28454
66792Sphingobacterium multivorum strain FDAARGOS_114328454.16completepatric28454
66792Sphingobacterium multivorum strain NCTC1103428454.5wgspatric28454

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.604no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.472yes
69480spore-formingspore-formingAbility to form endo- or exosporesno88.478no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.503yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno86.042no

External links

@ref: 5942

culture collection no.: DSM 15469, NCTC 11034, ATCC 33613, CIP 80.53, ATCC 33298, GIFU 926

straininfo link

  • @ref: 83288
  • straininfo: 389491

literature

  • topic: Enzymology
  • Pubmed-ID: 14729071
  • title: Structural analysis of sphingophospholipids derived from Sphingobacterium spiritivorum, the type species of genus Sphingobacterium.
  • authors: Naka T, Fujiwara N, Yano I, Maeda S, Doe M, Minamino M, Ikeda N, Kato Y, Watabe K, Kumazawa Y, Tomiyasu I, Kobayashi K
  • journal: Biochim Biophys Acta
  • DOI: 10.1016/j.bbalip.2003.10.010
  • year: 2003
  • mesh: Ceramides/analysis, Chromatography, Thin Layer, Fatty Acids/analysis, Magnetic Resonance Spectroscopy, Molecular Structure, Phospholipids/*chemistry/isolation & purification, Solubility, Spectrometry, Mass, Fast Atom Bombardment, Spectrophotometry, Infrared, Sphingobacterium/*chemistry, Sphingolipids/*chemistry/isolation & purification
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitle
5942Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15469)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15469
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38426Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11149
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83288Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389491.1StrainInfo: A central database for resolving microbial strain identifiers
121176Curators of the CIPCollection of Institut Pasteur (CIP 80.53)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2080.53