Strain identifier

BacDive ID: 141110

Type strain: Yes

Species: Tenacibaculum agarivorans

Strain Designation: HZ1

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1908389 (species)

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General

@ref: 44018

BacDive-ID: 141110

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Tenacibaculum agarivorans HZ1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from the surface of a marine alga Porphyra yezoensis Ueda.

NCBI tax id

  • NCBI tax id: 1908389
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongjun Du, Shandong Univ.

doi: 10.13145/bacdive141110.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Tenacibaculum
  • species: Tenacibaculum agarivorans
  • full scientific name: Tenacibaculum agarivorans Xu et al. 2017

@ref: 44018

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Tenacibaculum

species: Tenacibaculum agarivorans

strain designation: HZ1

type strain: yes

Morphology

cell morphology

  • @ref: 44018
  • gram stain: negative
  • cell length: 1.0-4.0 µm
  • cell width: 0.3-0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 44018
  • colony size: 1.0-2.0 mm
  • colony color: beige
  • colony shape: circular
  • incubation period: 2 days
  • medium used: marine agar

pigmentation

  • @ref: 44018
  • production: no
  • name: flexirubin-type pigments

Culture and growth conditions

culture medium

  • @ref: 44018
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
44018positivegrowth15-37
44018positiveoptimum28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
44018positivegrowth6.5-8.0
44018positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44018aerobe
67771aerobe

spore formation

  • @ref: 44018
  • spore formation: no

halophily

  • @ref: 44018
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 2-3 %

observation

  • @ref: 44018
  • observation: the predominant menaquinone is MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4401853258sodium citrate-assimilation
4401885146carboxymethylcellulose-hydrolysis
4401853311sodium alginate-hydrolysis
4401828017starch-hydrolysis
44018esculin ferric citrate+builds acid from
44018potassium 5-dehydro-D-gluconate+builds acid from
440182509agar+hydrolysis
44018casein+hydrolysis
440185291gelatin+hydrolysis
4401853424tween 20+hydrolysis
4401853423tween 40+hydrolysis
4401853425tween 60+hydrolysis
4401853426tween 80+hydrolysis
4401830089acetate+oxidation
4401813705acetoacetate+oxidation
4401832323glucuronamide+oxidation
4401870744glycine-proline+oxidation
4401817164stachyose+oxidation
4401817992sucrose+oxidation
4401817632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
440187731ofloxacinyesyes5 µg (disc)
4401817698chloramphenicolyesyes30 µg (disc)
4401828001vancomycinyesyes30 µg (disc)
4401848923erythromycinyesyes15 µg (disc)
44018100246norfloxacinyesyes10 µg (disc)
4401828077rifampicinyesyes5 µg (disc)
440186472lincomycinyesyes2 µg (disc)
440186104kanamycinyesyes30 µg
440187507neomycinyesyes30 µg
4401828864tobramycinyesyes10 µg
4401817076streptomycinyesyes10 µg
4401817334penicillinyesyes10 µg
4401817833gentamicinyesyes10 µg

metabolite production

@refChebi-IDmetaboliteproduction
4401815688acetoinno
4401835581indoleno
4401815138sulfideno

metabolite tests

  • @ref: 44018
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
44018catalase+1.11.1.6
44018cytochrome oxidase-1.9.3.1
44018arginine dihydrolase-3.5.3.6
44018lysine decarboxylase-4.1.1.18
44018ornithine decarboxylase-4.1.1.17
44018urease-3.5.1.5
44018tryptophan deaminase-4.1.99.1
44018alkaline phosphatase+3.1.3.1
44018leucine arylamidase+3.4.11.1
44018valine arylamidase+
44018cystine arylamidase+3.4.11.3
44018trypsin+3.4.21.4
44018acid phosphatase+3.1.3.2
44018esterase (C 4)-
44018esterase Lipase (C 8)-
44018lipase (C 14)-
44018alpha-chymotrypsin-3.4.21.1
44018alpha-galactosidase-3.2.1.22
44018beta-galactosidase-3.2.1.23
44018beta-glucuronidase-3.2.1.31
44018alpha-glucosidase-3.2.1.20
44018beta-glucosidase-3.2.1.21
44018N-acetyl-beta-glucosaminidase-3.2.1.52
44018alpha-mannosidase-3.2.1.24
44018beta-mannosidase-3.2.1.25
44018naphthol-AS-BI-phosphohydrolase-

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44018C15:0 anteiso0.2
    44018C15:00.6
    44018C16:1ω7c and/or C16:118.3
    44018C13:0 iso0.5
    44018C15:0 iso35.8
    44018C15:0 iso 3OH5.3
    44018C15:1 iso G12.8
    44018C16:0 iso0.2
    44018C16:0 iso 3OH0.6
    44018C17:0 iso1.3
    44018C17:0 iso 3OH13.8
    44018iso-C17:1 I and/or antei-C 17:1 B1.4
    44018C17:1 iso ω9c3.1
    44018Unknown2.113565
  • type of FA analysis: whole cell analysis
  • incubation medium: MB
  • incubation temperature: 28
  • software version: Sherlock 6.1
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
44018the surface of a marine alga Porphyra yezoensis Uedacoastal area of WeihaiChinaCHNAsia
67771From marine alga Porphyra yezoensis Ueda(AST58-103)the coastal area of WeihaiChinaCHNAsia37.639122.125

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae
  • Cat3: #Red algae

taxonmaps

  • @ref: 69479
  • File name: preview.99_8099.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_3736;97_4594;98_5896;99_8099&stattab=map
  • Last taxonomy: Tenacibaculum agarivorans subclade
  • 16S sequence: KX982669
  • Sequence Identity:
  • Total samples: 789
  • soil counts: 27
  • aquatic counts: 659
  • animal counts: 99
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 44018
  • description: 16S rRNA gene sequence
  • accession: KX982669
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tenacibaculum agarivorans HZ1GCA_001936575contigncbi1908389
66792Tenacibaculum agarivorans HZ12788500482draftimg1908389

GC content

  • @ref: 44018
  • GC-content: 31.8

External links

@ref: 44018

culture collection no.: MCCC 1H00174, KCTC 52476

literature

  • topic: Phylogeny
  • Pubmed-ID: 29043952
  • title: Tenacibaculum agarivorans sp. nov., an agar-degrading bacterium isolated from marine alga Porphyra yezoensis Ueda.
  • authors: Xu ZX, Yu P, Mu DS, Liu Y, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002432
  • year: 2017
  • mesh: Agar, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, Porphyra/*microbiology, RNA, Ribosomal, 16S/genetics, *Seawater, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44018Zhen-Xing Xu, Pei Yu, Da-Shuai Mu, Yan Liu, Zong-Jun DuTenacibaculum agarivorans sp. nov., an agar-degrading bacterium isolated from marine alga Porphyra yezoensis Ueda10.1099/ijsem.0.002432IJSEM 67: 5139-5143 201729043952
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/