Tenacibaculum agarivorans (MCCC 1H00174, KCTC 52476, HZ1)

Name: Tenacibaculum agarivorans (MCCC 1H00174, KCTC 52476, HZ1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141110

Type strain

Strain Designation HZ1

Culture col. no. MCCC 1H00174 KCTC 52476 HZ1

NCBI tax ID(s) 1908389

Special Collections KCTC Literature strains

Links

Tenacibaculum agarivorans HZ1 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from the surface of a marine alga Porphyra yezoensis Ueda.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286102

KCTC 52476

@ref 20215

Last LPSN update 2025-12-16 10:03:46

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Tenacibaculum

Species Tenacibaculum agarivorans

Full scientific name Tenacibaculum agarivorans Xu et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
44018	negative	1.0-4.0 µm	0.3-0.5 µm	rod-shaped
125439	negative					98.7

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
44018	1.0-2.0 mm	beige	circular	2 days	marine agar

Pigmentation

@ref	Production	Name
44018		flexirubin-type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
44018	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
44018	positive	growth	15-37
44018	positive	optimum	28	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
44018	positive	optimum	7
44018	positive	growth	6.5-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44018	aerobe
67771	aerobe
125439	obligate aerobe	95.4

Spore formation

44018

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
44018	NaCl	positive	optimum	2-3 %

Observation

44018

Observationthe predominant menaquinone is MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44018	30089 ChEBI	acetate	+	oxidation
44018	13705 ChEBI	acetoacetate	+	oxidation
44018	2509 ChEBI	agar	+	hydrolysis
44018	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
44018		casein	+	hydrolysis
44018		esculin ferric citrate	+	builds acid from
44018	5291 ChEBI	gelatin	+	hydrolysis
44018	32323 ChEBI	glucuronamide	+	oxidation
44018	70744 ChEBI	glycine-proline	+	oxidation
44018	17632 ChEBI	nitrate	+	reduction
44018		potassium 5-dehydro-D-gluconate	+	builds acid from
44018	53311 ChEBI	sodium alginate	-	hydrolysis
44018	53258 ChEBI	sodium citrate	-	assimilation
44018	17164 ChEBI	stachyose	+	oxidation
44018	28017 ChEBI	starch	-	hydrolysis
44018	17992 ChEBI	sucrose	+	oxidation
44018	53424 ChEBI	tween 20	+	hydrolysis
44018	53423 ChEBI	tween 40	+	hydrolysis
44018	53425 ChEBI	tween 60	+	hydrolysis
44018	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
44018	17698	chloramphenicol	30 µg (disc)
44018	48923	erythromycin	15 µg (disc)
44018	17833	gentamicin		10 µg
44018	6104	kanamycin		30 µg
44018	6472	lincomycin	2 µg (disc)
44018	7507	neomycin		30 µg
44018	100246	norfloxacin	10 µg (disc)
44018	7731	ofloxacin	5 µg (disc)
44018	17334	penicillin		10 µg
44018	28077	rifampicin	5 µg (disc)
44018	17076	streptomycin		10 µg
44018	28864	tobramycin		10 µg
44018	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
44018	15688 ChEBI	acetoin
44018	35581 ChEBI	indole
44018	15138 ChEBI	sulfide

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
44018	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
44018	acid phosphatase	+	3.1.3.2
44018	alkaline phosphatase	+	3.1.3.1
44018	alpha-chymotrypsin	-	3.4.21.1
44018	alpha-galactosidase	-	3.2.1.22
44018	alpha-glucosidase	-	3.2.1.20
44018	alpha-mannosidase	-	3.2.1.24
44018	arginine dihydrolase	-	3.5.3.6
44018	beta-galactosidase	-	3.2.1.23
44018	beta-glucosidase	-	3.2.1.21
44018	beta-glucuronidase	-	3.2.1.31
44018	beta-mannosidase	-	3.2.1.25
44018	catalase	+	1.11.1.6
44018	cystine arylamidase	+	3.4.11.3
44018	cytochrome oxidase	-	1.9.3.1
44018	esterase (C 4)	-
44018	esterase Lipase (C 8)	-
44018	leucine arylamidase	+	3.4.11.1
44018	lipase (C 14)	-
44018	lysine decarboxylase	-	4.1.1.18
44018	N-acetyl-beta-glucosaminidase	-	3.2.1.52
44018	naphthol-AS-BI-phosphohydrolase	-
44018	ornithine decarboxylase	-	4.1.1.17
44018	trypsin	+	3.4.21.4
44018	tryptophan deaminase	-	4.1.99.1
44018	urease	-	3.5.1.5
44018	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

44018

Fatty acid	Percentage	ECL
C15:0 iso	35.8
C16:1ω7c and/or C16:1	18.3
C17:0 iso 3OH	13.8
C15:1 iso G	12.8
C15:0 iso 3OH	5.3
C17:1 iso ω9c	3.1
Unknown	2.1	13565
iso-C17:1 I and/or antei-C 17:1 B	1.4
C17:0 iso	1.3
C16:0 iso 3OH	0.6
C15:0	0.6
C13:0 iso	0.5
C16:0 iso	0.2
C15:0 anteiso	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Red algae

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
44018	the surface of a marine alga Porphyra yezoensis Ueda	coastal area of Weihai	China	CHN	Asia
67771	From marine alga Porphyra yezoensis Ueda(AST58-103)	the coastal area of Weihai	China	CHN	Asia	37.639	122.125 37.639/122.125

Taxonmaps

69479

Global distribution of 16S sequence KX982669 (>99% sequence identity) for Tenacibaculum agarivorans subclade from Microbeatlas

Aquatic Samples	659
Soil Samples	27
Animal Samples	99
Plant Samples	4
Total Samples	789

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM193657v1 assembly for Tenacibaculum agarivorans HZ1	contig	GCA_001936575	2788500482	1908389	45.12

16S sequences

@ref	Description	Accession	Database
44018	Tenacibaculum agarivorans strain HZ1 16S ribosomal RNA gene, partial sequence	KX982669

GC content

44018

GC-content (mol%)31.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tenacibaculum agarivorans HZ1
NCBI: GCA_001936575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.90	no
125439	motility	BacteriaNetⓘ	yes	50.70	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum agarivorans sp. nov., an agar-degrading bacterium isolated from marine alga Porphyra yezoensis Ueda.	Xu ZX, Yu P, Mu DS, Liu Y, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002432	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44018	Zhen-Xing Xu, Pei Yu, Da-Shuai Mu, Yan Liu, Zong-Jun Du: Tenacibaculum agarivorans sp. nov., an agar-degrading bacterium isolated from marine alga Porphyra yezoensis Ueda. IJSEM 67: 5139 - 5143 2017 ( DOI 10.1099/ijsem.0.002432 , PubMed 29043952 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tenacibaculum agarivorans (MCCC 1H00174, KCTC 52476, HZ1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001936575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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Fatty acid profile