Name: Tenacibaculum agarivorans HZ1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141110

Type strain:

Species: Tenacibaculum agarivorans

Strain Designation: HZ1

Culture col. no.: MCCC 1H00174, KCTC 52476

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1908389 (species)

Section

Tenacibaculum agarivorans HZ1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from the surface of a marine alga Porphyra yezoensis Ueda.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Tenacibaculum*
	Species	**Tenacibaculum agarivorans**
	Full Scientific Name (PNU)	Tenacibaculum agarivorans Xu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44018]	Gram stain	negative
[Ref.: #44018]	Cell length	1.0-4.0 µm
[Ref.: #44018]	Cell width	0.3-0.5 µm
[Ref.: #44018]	Cell shape	rod-shaped
[Ref.: #44018]	Motility	no

[Ref.: #44018]	Colony size	1.0-2.0 mm
[Ref.: #44018]	Colony color	beige
[Ref.: #44018]	Colony shape	circular
[Ref.: #44018]	Incubation period	2 days
[Ref.: #44018]	Cultivation medium used	marine agar

[Ref.: #44018]	Pigment production	no
[Ref.: #44018]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44018]

Culture medium

Marine agar (MA)

[Ref.: #44018]

Culture medium growth

		Temperature
[Ref.: #44018]	growth	15-37 °C
[Ref.: #44018]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #44018]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #44018]			optimum	7
[Ref.: #44018]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44018]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #44018]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44018]		NaCl		optimum	2-3	%

[Ref.: #44018]

Observation

the predominant menaquinone is MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44018]	acetate ChEBI	+	oxidation
[Ref.: #44018]	acetoacetate ChEBI	+	oxidation
[Ref.: #44018]	agar ChEBI	+	hydrolysis
[Ref.: #44018]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #44018]	casein	+	hydrolysis
[Ref.: #44018]	esculin ferric citrate	+	builds acid from
[Ref.: #44018]	gelatin ChEBI	+	hydrolysis
[Ref.: #44018]	glucuronamide ChEBI	+	oxidation
[Ref.: #44018]	glycine-proline ChEBI	+	oxidation
[Ref.: #44018]	nitrate ChEBI	+	reduction
[Ref.: #44018]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #44018]	sodium alginate ChEBI	-	hydrolysis
[Ref.: #44018]	sodium citrate ChEBI	-	assimilation
[Ref.: #44018]	stachyose ChEBI	+	oxidation
[Ref.: #44018]	starch ChEBI	-	hydrolysis
[Ref.: #44018]	sucrose ChEBI	+	oxidation
[Ref.: #44018]	tween 20 ChEBI	+	hydrolysis
[Ref.: #44018]	tween 40 ChEBI	+	hydrolysis
[Ref.: #44018]	tween 60 ChEBI	+	hydrolysis
[Ref.: #44018]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #44018]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #44018]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #44018]	gentamicin ChEBI				yes	10	µg
[Ref.: #44018]	kanamycin ChEBI				yes	30	µg
[Ref.: #44018]	lincomycin ChEBI	yes	2	µg (disc)
[Ref.: #44018]	neomycin ChEBI				yes	30	µg
[Ref.: #44018]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #44018]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #44018]	penicillin ChEBI				yes	10	µg
[Ref.: #44018]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #44018]	streptomycin ChEBI				yes	10	µg
[Ref.: #44018]	tobramycin ChEBI				yes	10	µg
[Ref.: #44018]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #44018]		acetoin ChEBI
[Ref.: #44018]		indole ChEBI
[Ref.: #44018]		sulfide ChEBI

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #44018]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #44018]	acid phosphatase	+	3.1.3.2
[Ref.: #44018]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44018]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44018]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44018]	alpha-glucosidase	-	3.2.1.20
[Ref.: #44018]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44018]	arginine dihydrolase	-	3.5.3.6
[Ref.: #44018]	beta-galactosidase	-	3.2.1.23
[Ref.: #44018]	beta-glucosidase	-	3.2.1.21
[Ref.: #44018]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44018]	beta-mannosidase	-	3.2.1.25
[Ref.: #44018]	catalase	+	1.11.1.6
[Ref.: #44018]	cystine arylamidase	+	3.4.11.3
[Ref.: #44018]	cytochrome oxidase	-	1.9.3.1
[Ref.: #44018]	esterase (C 4)	-
[Ref.: #44018]	esterase Lipase (C 8)	-
[Ref.: #44018]	leucine arylamidase	+	3.4.11.1
[Ref.: #44018]	lipase (C 14)	-
[Ref.: #44018]	lysine decarboxylase	-	4.1.1.18
[Ref.: #44018]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #44018]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #44018]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #44018]	trypsin	+	3.4.21.4
[Ref.: #44018]	tryptophan deaminase	-	4.1.99.1
[Ref.: #44018]	urease	-	3.5.1.5
[Ref.: #44018]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44018]

Fatty acid	Percentage	ECL
C15:0 iso	35.8
C16:1ω7c and/or C16:1	18.3
C17:0 iso 3OH	13.8
C15:1 iso G	12.8
C15:0 iso 3OH	5.3
C17:1 iso ω9c	3.1
Unknown	2.1	13565
iso-C17:1 I and/or antei-C 17:1 B	1.4
C17:0 iso	1.3
C16:0 iso 3OH	0.6
C15:0	0.6
C13:0 iso	0.5
C16:0 iso	0.2
C15:0 anteiso	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44018]	Sample type/isolated from	the surface of a marine alga Porphyra yezoensis Ueda
[Ref.: #44018]	Geographic location (country and/or sea, region)	coastal area of Weihai
[Ref.: #44018]	Country	China
[Ref.: #44018]	Country ISO 3 Code	CHN
[Ref.: #44018]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From marine alga Porphyra yezoensis Ueda(AST58-103)
[Ref.: #67771]	Geographic location (country and/or sea, region)	the coastal area of Weihai
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.6390°/122.1250°
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX982669 (>99% sequence identity) for Tenacibaculum agarivorans subclade from Microbeatlas

Aquatic Samples	659
Soil Samples	27
Animal Samples	99
Plant Samples	4
Total Samples	789

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44018]	16S rRNA gene sequence	KX982669		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tenacibaculum agarivorans HZ1	GCA_001936575	contig	GenBank	1908389 tax ID	*
[Ref.: #66792]	Tenacibaculum agarivorans HZ1	2788500482	draft	JGI IMG/M	1908389 tax ID	*

[Ref.: #44018]

GC-content

31.8 mol%

Availability in culture collections External links

[Ref.: #44018]

Culture collection no.

MCCC 1H00174, KCTC 52476

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum agarivorans sp. nov., an agar-degrading bacterium isolated from marine alga Porphyra yezoensis Ueda.	Xu ZX, Yu P, Mu DS, Liu Y, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002432	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44018

Zhen-Xing Xu, Pei Yu, Da-Shuai Mu, Yan Liu, Zong-Jun Du: Tenacibaculum agarivorans sp. nov., an agar-degrading bacterium isolated from marine alga Porphyra yezoensis Ueda. IJSEM 67: 5139 - 5143 2017 ( DOI 10.1099/ijsem.0.002432 , PubMed 29043952 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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