Strain identifier
version 9 (current version)
General
@ref: 44010
BacDive-ID: 141102
keywords: 16S sequence, Archaea, aerobe, chemoautolithotroph, rod-shaped
description: Nitrosopumilus maritimus ATCC TSD-97 is an aerobe, chemoautolithotroph, rod-shaped archaeon that was isolated from a tropical marine fish tank at the Seattle Aquarium in Seattle.
NCBI tax id
- NCBI tax id: 338192
- Matching level: species
doi: 10.13145/bacdive141102.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/nitrososphaerota
- domain: Archaea
- phylum: Nitrososphaerota
- class: Nitrososphaeria
- order: Nitrosopumilales
- family: Nitrosopumilaceae
- genus: Nitrosopumilus
- species: Nitrosopumilus maritimus
- full scientific name: Nitrosopumilus maritimus Qin et al. 2017
synonyms
- @ref: 20215
- synonym: Nitrosopumilus maritimus
@ref: 44010
domain: Archaea
phylum: Thaumarchaeota
class: Nitrososphaeria
order: Nitrosopumilales
family: Nitrosopumilaceae
genus: Nitrosopumilus
species: Nitrosopumilus maritimus
type strain: yes
Morphology
cell morphology
- @ref: 44010
- cell length: 0.5-0.9 µm
- cell width: 0.17-0.22 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 44010
multicellular morphology
- @ref: 44010
- forms multicellular complex: no
Culture and growth conditions
culture medium
- @ref: 44010
- growth: yes
- composition: 26 g/L NaCl, 5 g/L MgSO4 6H2O, 1.5 g/L CaCl 2x2H2O, 0.1 g/L KBr, 10 ml/L HEPES buffer (1 M HEPES and 0.6 M NaOH), 2 ml/L NaHCO3 (1 M), 5 ml/L KH2PO4 (0.4 g/L), 1 ml/L FeNaEDTA solution (7.5 M), 1 ml/L trace element solution, and 1 ml/L NH 4 Cl (1 M)
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 44010 | positive | growth | 15-35 |
| 44010 | positive | optimum | 32 |
| 44010 |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 44010 | positive | growth | 6.8-8.1 |
| 44010 | positive | optimum | 7.3 |
Physiology and metabolism
tolerance
| @ref | compound |
|---|---|
| 44010 | ammonia |
| 44010 | nitrite |
oxygen tolerance
- @ref: 44010
- oxygen tolerance: aerobe
nutrition type
- @ref: 44010
- type: chemoautolithotroph
halophily
| @ref | salt | growth | tested relation | concentration | halophily level |
|---|---|---|---|---|---|
| 44010 | NaCl | positive | optimum | 32-37 % | |
| 44010 | moderately halophilic |
observation
| @ref | observation |
|---|---|
| 44010 | the cell envelope consists of an S-layer with p6 symmetry covering a monolayer cytoplasmic membrane |
| 44010 | the minimum generation time is around 19 h |
| 44010 | ectoine and hydroxyectoine are synthesized in cells in response to osmotic shock |
| 44010 | cells are photosensitive and completely inhibited by continuous illumination |
| 44010 | respiratory quinones are saturated and monounsaturated menaquinones with 6 isoprenoid units |
| 44010 | free-living in a wide range of marine systems, including surface oceans, hadal oceans, saltwater aquaria, brackish waters, marine and estuarine sediments, salt marshes, and brine-seawater interfaces |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 44010 | 16526 | carbon dioxide | + | carbon source |
| 44010 | 16199 | urea | + | nitrogen source |
| 44010 | 16134 | ammonia | + | oxidation |
metabolite production
- @ref: 44010
- Chebi-ID: 30411
- metabolite: cobalamin
- production: yes
enzymes
- @ref: 44010
- value: urease
- activity: -
- ec: 3.5.1.5
Isolation, sampling and environmental information
isolation
- @ref: 44010
- sample type: a tropical marine fish tank at the Seattle Aquarium in Seattle
- geographic location: Washington
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Climate | #Hot | #Tropical |
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
| #Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_187103.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17653;96_68790;97_89432;98_121702;99_187103&stattab=map
- Last taxonomy: Nitrosopumilus
- 16S sequence: CP000866
- Sequence Identity:
- Total samples: 3133
- soil counts: 75
- aquatic counts: 3053
- animal counts: 2
- plant counts: 3
Sequence information
16S sequences
- @ref: 44010
- description: Nitrosopumilus maritimus SCM1, complete genome
- accession: CP000866
- database: nuccore
GC content
- @ref: 44010
- GC-content: 34.2
External links
@ref: 44010
culture collection no.: ATCC TSD-97, NCIMB 15022, SCM 1
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 19794413 | Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. | Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA | Nature | 10.1038/nature08465 | 2009 | Ammonia/*chemistry/*metabolism, Archaea/*metabolism, Bacteria/*metabolism, Kinetics, Models, Biological, Nitrogen/metabolism, Nitrosomonas/metabolism, Oxidation-Reduction, Plankton/metabolism, Quaternary Ammonium Compounds/metabolism, Seawater/chemistry | Enzymology |
| Metabolism | 20421470 | Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. | Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hugler M, Karr EA, Konneke M, Shin M, Lawton TJ, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Lang D, Sievert SM, Rosenzweig AC, Manning G, Stahl DA | Proc Natl Acad Sci U S A | 10.1073/pnas.0913533107 | 2010 | Amino Acids, Diamino/biosynthesis, Ammonia/metabolism, Autotrophic Processes/*genetics, Cell Division/genetics, Crenarchaeota/cytology/*genetics, Electron Transport/genetics, Energy Metabolism/genetics, Evolution, Molecular, Gene Expression Regulation, Genome, Archaeal/*genetics, *Internationality, Metagenome/genetics, Nitrogen/*metabolism, Oxidation-Reduction, Photosynthesis/genetics, Phylogeny, RNA, Untranslated/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Transcription, Genetic | Genetics |
| Phylogeny | 21085199 | Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage. | Hollibaugh JT, Gifford S, Sharma S, Bano N, Moran MA | ISME J | 10.1038/ismej.2010.172 | 2010 | Ammonia/*metabolism, Betaproteobacteria/classification/*genetics/metabolism, Crenarchaeota/classification/*genetics/metabolism, *Gene Expression Profiling, Genes, Archaeal, Genes, Bacterial, *Metagenome, Oxidation-Reduction, Phylogeny, Plankton/classification/genetics/metabolism, RNA, Ribosomal, 16S/genetics | Metabolism |
| Metabolism | 21255356 | Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota. | La Cono V, Smedile F, Ferrer M, Golyshin PN, Giuliano L, Yakimov MM | Microb Biotechnol | 10.1111/j.1751-7915.2010.00186.x | 2010 | Archaeal Proteins/genetics/metabolism, Autotrophic Processes, *Biosynthetic Pathways, Carbon/*metabolism, Crenarchaeota/classification/*genetics/isolation & purification/*metabolism, Enzymes/genetics/metabolism, *Genomics, Molecular Sequence Data, Phylogeny, Seawater/microbiology | Phylogeny |
| Metabolism | 21392374 | Functional analysis of archaeal MBF1 by complementation studies in yeast. | Marrero Coto J, Ehrenhofer-Murray AE, Pons T, Siebers B | Biol Direct | 10.1186/1745-6150-6-18 | 2011 | Archaeal Proteins/genetics/*metabolism, Genetic Complementation Test, Saccharomyces cerevisiae/genetics/*metabolism | |
| Metabolism | 21487199 | Enrichment of a novel marine ammonia-oxidizing archaeon obtained from sand of an eelgrass zone. | Matsutani N, Nakagawa T, Nakamura K, Takahashi R, Yoshihara K, Tokuyama T | Microbes Environ | 10.1264/jsme2.me10156 | 2011 | Ammonia/*metabolism, Archaea/classification/genetics/*isolation & purification/*metabolism, Archaeal Proteins/genetics/metabolism, Geologic Sediments/*microbiology, Hydrocharitaceae/*microbiology, Molecular Sequence Data, Oxidoreductases/genetics/metabolism, Phylogeny, Seawater/*microbiology, Silicon Dioxide/analysis | Phylogeny |
| Metabolism | 21514476 | Nitrogen metabolism and kinetics of ammonia-oxidizing archaea. | Martens-Habbena W, Stahl DA | Methods Enzymol | 10.1016/B978-0-12-386489-5.00019-1 | 2011 | Ammonia/analysis/*metabolism, Archaea/*growth & development/*metabolism, Kinetics, Methods, Nitrification/*physiology, Nitrogen/analysis/*metabolism, Nitrogen Cycle/*genetics/physiology, Nitrosomonas europaea/growth & development/metabolism, Oxidation-Reduction | Enzymology |
| Metabolism | 21618465 | Ammonia-oxidizing bacteria dominates over ammonia-oxidizing archaea in a saline nitrification reactor under low DO and high nitrogen loading. | Ye L, Zhang T | Biotechnol Bioeng | 10.1002/bit.23211 | 2011 | Ammonia/*metabolism, Archaea/*classification/genetics/*metabolism, Bacteria/*classification/genetics/*metabolism, *Biodiversity, Bioreactors/*microbiology, Culture Media/chemistry, DNA Fingerprinting, DNA, Archaeal/genetics, DNA, Bacterial/genetics, Molecular Sequence Data, Nitrification, Nitrogen/metabolism, Oxidation-Reduction, Oxygen/metabolism, Polymorphism, Restriction Fragment Length, Real-Time Polymerase Chain Reaction, Salinity, Sequence Analysis, DNA, Water Microbiology | Phylogeny |
| Metabolism | 22050608 | Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine. | Tully BJ, Nelson WC, Heidelberg JF | Environ Microbiol | 10.1111/j.1462-2920.2011.02628.x | 2011 | Ammonia/metabolism, Archaea/*genetics/metabolism, Carbon/metabolism, DNA, Archaeal/genetics, Genomic Islands, Maine, *Metagenome, Metagenomics, Oceans and Seas, Oxidation-Reduction, Phylogeny, Plankton/*genetics/metabolism, Seawater/microbiology, Sequence Analysis, DNA | Genetics |
| Metabolism | 23057688 | Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system. | Yan J, Haaijer SC, Op den Camp HJ, van Niftrik L, Stahl DA, Konneke M, Rush D, Sinninghe Damste JS, Hu YY, Jetten MS | Environ Microbiol | 10.1111/j.1462-2920.2012.02894.x | 2012 | Ammonia/*metabolism, Aquatic Organisms/genetics/metabolism/ultrastructure, Archaea/genetics/*metabolism/*ultrastructure, Bacteria, Anaerobic/genetics/*metabolism/*ultrastructure, Betaproteobacteria/genetics/metabolism/ultrastructure, Bioreactors/microbiology, Models, Biological, Oxidation-Reduction, Oxygen/*metabolism, Oxygen Consumption/genetics, Phylogeny, *Symbiosis, Waste Water/microbiology/parasitology | Phylogeny |
| 23100763 | An evidence of laccases in archaea. | Sharma KK, Kuhad RC | Indian J Microbiol | 10.1007/s12088-009-0039-4 | 2009 | |||
| Phylogeny | 23426011 | Life in the dark: metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism. | Tetu SG, Breakwell K, Elbourne LD, Holmes AJ, Gillings MR, Paulsen IT | ISME J | 10.1038/ismej.2013.14 | 2013 | Ammonia/*metabolism, Archaea/*classification/genetics/isolation & purification/metabolism, Australia, Autotrophic Processes, Bacteria/*classification/genetics/isolation & purification/metabolism, Caves/*microbiology, DNA, Archaeal/genetics, DNA, Bacterial/genetics, Darkness, *Metagenomics, Nitrogen/*metabolism, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
| Enzymology | 23657360 | Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea. | Horak RE, Qin W, Schauer AJ, Armbrust EV, Ingalls AE, Moffett JW, Stahl DA, Devol AH | ISME J | 10.1038/ismej.2013.75 | 2013 | Ammonia/*metabolism, Archaea/genetics/metabolism/*physiology, Kinetics, Oxidation-Reduction, Oxidoreductases/genetics/metabolism, Seawater/chemistry/*microbiology, *Temperature | Metabolism |
| Metabolism | 23995944 | Transcriptional response of the archaeal ammonia oxidizer Nitrosopumilus maritimus to low and environmentally relevant ammonia concentrations. | Nakagawa T, Stahl DA | Appl Environ Microbiol | 10.1128/AEM.02028-13 | 2013 | Ammonia/*metabolism, Archaea/*genetics/growth & development/*metabolism, Chemoautotrophic Growth, *Genes, Archaeal, Oxidation-Reduction, RNA, Archaeal/genetics, RNA, Messenger/genetics/metabolism, Seawater/microbiology, *Water Microbiology | |
| Metabolism | 24589203 | Thermodynamic characterization of proton-ionizable functional groups on the cell surfaces of ammonia-oxidizing bacteria and archaea. | Gorman-Lewis D, Martens-Habbena W, Stahl DA | Geobiology | 10.1111/gbi.12075 | 2014 | Ammonia/metabolism, Archaea/*chemistry/metabolism, Bacteria/*chemistry/metabolism, Calorimetry, Models, Theoretical, Oxidation-Reduction, Potentiometry, Protons, Species Specificity, Thermodynamics | Phylogeny |
| Phylogeny | 24907263 | Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota. | Stieglmeier M, Klingl A, Alves RJE, Rittmann SKR, Melcher M, Leisch N, Schleper C | Int J Syst Evol Microbiol | 10.1099/ijs.0.063172-0 | 2014 | Ammonia/*metabolism, Austria, Base Composition, Crenarchaeota/*classification/genetics/isolation & purification, DNA, Archaeal/genetics, Glyceryl Ethers/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 25114236 | Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation. | Qin W, Amin SA, Martens-Habbena W, Walker CB, Urakawa H, Devol AH, Ingalls AE, Moffett JW, Armbrust EV, Stahl DA | Proc Natl Acad Sci U S A | 10.1073/pnas.1324115111 | 2014 | Ammonia/*metabolism, Archaea/classification/genetics/*metabolism, Ecosystem, Hydrogen-Ion Concentration, Microscopy, Electron, Transmission, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Salinity, Seawater/microbiology, Temperature | Metabolism |
| Metabolism | 25420929 | The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger. | Martens-Habbena W, Qin W, Horak RE, Urakawa H, Schauer AJ, Moffett JW, Armbrust EV, Ingalls AE, Devol AH, Stahl DA | Environ Microbiol | 10.1111/1462-2920.12677 | 2015 | Ammonia/*metabolism, Ammonium Compounds/metabolism, Aquatic Organisms/metabolism, Archaea/*metabolism, Betaproteobacteria/metabolism, Cyclic N-Oxides/*pharmacology, Denitrification, Imidazoles/*pharmacology, Nitric Oxide/biosynthesis/*metabolism, *Nitrification, Nitrogen/metabolism, Oxidation-Reduction, Thiourea/*analogs & derivatives/pharmacology | Biotechnology |
| Phylogeny | 25939270 | Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia. | Devereux R, Mosher JJ, Vishnivetskaya TA, Brown SD, Beddick DL Jr, Yates DF, Palumbo AV | Geobiology | 10.1111/gbi.12142 | 2015 | Ammonium Compounds/analysis, Anaerobiosis, Archaea/*classification/*genetics, Bacteria/*classification/*genetics, *Biota, Carbon/analysis, Cluster Analysis, DNA, Archaeal/chemistry/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Geologic Sediments/*chemistry/*microbiology, Gulf of Mexico, Iron/analysis, Louisiana, Molecular Sequence Data, Phosphates/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Enzymology | 26065277 | [Diversity of thaumarchaeal nitrite reductase (nirK) -like genes in environments]. | Huang X, Luo J, Zhao D, Lin W | Wei Sheng Wu Xue Bao | 2015 | Archaea/classification/*enzymology/genetics/isolation & purification, Archaeal Proteins/*genetics, Bacteria/classification/*enzymology/genetics/isolation & purification, Fresh Water/*microbiology, *Genetic Variation, Geologic Sediments/*microbiology, Molecular Sequence Data, Nitrite Reductases/*genetics, Phylogeny, Soil Microbiology | Phylogeny | |
| Phylogeny | 26219499 | The influence of salinity on the abundance, transcriptional activity, and diversity of AOA and AOB in an estuarine sediment: a microcosm study. | Zhang Y, Chen L, Dai T, Tian J, Wen D | Appl Microbiol Biotechnol | 10.1007/s00253-015-6804-x | 2015 | Ammonia/*metabolism, Archaea/*classification/genetics, Bacteria/*classification/genetics, *Biodiversity, Estuaries, Geologic Sediments/*microbiology, Oxidation-Reduction, *Salinity, *Transcription, Genetic | Metabolism |
| Phylogeny | 27120311 | Low genome content diversity of marine planktonic Thaumarchaeota. | Luo H, Sun Y, Hollibaugh JT, Moran MA | Environ Microbiol Rep | 10.1111/1758-2229.12417 | 2016 | Archaea/*classification/*genetics, Computational Biology, *Genetic Variation, *Genome, Archaeal, Phylogeny, Seawater/*microbiology | Genetics |
| 27120678 | A Purple Cupredoxin from Nitrosopumilus maritimus Containing a Mononuclear Type 1 Copper Center with an Open Binding Site. | Hosseinzadeh P, Tian S, Marshall NM, Hemp J, Mullen T, Nilges MJ, Gao YG, Robinson H, Stahl DA, Gennis RB, Lu Y | J Am Chem Soc | 10.1021/jacs.5b13128 | 2016 | Archaea/*chemistry, Azurin/*chemistry, Binding Sites, Copper/*chemistry, Crystallography, X-Ray, Electron Spin Resonance Spectroscopy, Models, Molecular, Protein Conformation | ||
| Metabolism | 27357675 | Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy. | Hurley SJ, Elling FJ, Konneke M, Buchwald C, Wankel SD, Santoro AE, Lipp JS, Hinrichs KU, Pearson A | Proc Natl Acad Sci U S A | 10.1073/pnas.1518534113 | 2016 | Ammonia/*metabolism, Archaea/*metabolism, Culture Techniques, Energy Metabolism, Glyceryl Ethers/*metabolism, *Lipid Metabolism, Oceans and Seas, Oxidation-Reduction, Paleontology/*methods, Temperature | |
| Metabolism | 28847001 | Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle. | Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, Daebeler A, Romano S, Albertsen M, Stein LY, Daims H, Wagner M | Nature | 10.1038/nature23679 | 2017 | Ammonia/*metabolism, Archaea/metabolism, Bacteria/genetics/growth & development/isolation & purification/*metabolism, *Ecosystem, Hot Springs/microbiology, Kinetics, Nitrates/metabolism, *Nitrification, Nitrites/metabolism, Oxidation-Reduction, Soil Microbiology | Enzymology |
| Phylogeny | 29034851 | Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota. | Qin W, Heal KR, Ramdasi R, Kobelt JN, Martens-Habbena W, Bertagnolli AD, Amin SA, Walker CB, Urakawa H, Konneke M, Devol AH, Moffett JW, Armbrust EV, Jensen GJ, Ingalls AE, Stahl DA | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002416 | 2017 | Ammonia/metabolism, Archaea/*classification/genetics/isolation & purification, Base Composition, DNA, Archaeal/genetics, Estuaries, Geologic Sediments/*microbiology, Glyceryl Ethers/chemistry, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Washington | Transcriptome |
| Metabolism | 29053148 | Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations. | Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, Berube PM, Lowe TM, Moffett JW, Devol AH, Baliga NS, Arp DJ, Sayavedra-Soto LA, Hackett M, Armbrust EV, Ingalls AE, Stahl DA | ISME J | 10.1038/ismej.2017.186 | 2017 | Ammonia/*metabolism, Archaea/drug effects/enzymology/genetics/*metabolism, Archaeal Proteins/genetics/metabolism, Carbon Cycle, Copper/toxicity, Oxidation-Reduction, Oxidoreductases/genetics/metabolism, Proteomics, *Stress, Physiological/genetics, Transcriptome, Vitamin B 12/biosynthesis, Water Microbiology | Enzymology |
| Metabolism | 29891388 | Primer selection influences abundance estimates of ammonia oxidizing archaea in coastal marine sediments. | Marshall A, Phillips L, Longmore A, Tang C, Heidelberg K, Mele P | Mar Environ Res | 10.1016/j.marenvres.2018.06.001 | 2018 | Ammonia/*metabolism, Archaea/*physiology, Archaeal Proteins, Australia, Biodiversity, DNA, Archaeal, DNA, Bacterial, Geologic Sediments/chemistry/*microbiology, Oxidation-Reduction, Oxidoreductases, Phylogeny, Seawater, Sequence Analysis, DNA, Water Pollutants, Chemical/*metabolism | Phylogeny |
| Biotechnology | 29946801 | Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea. | Li F, Xie W, Yuan Q, Luo H, Li P, Chen T, Zhao X, Wang Z, Ma H | AMB Express | 10.1186/s13568-018-0635-y | 2018 | ||
| Phylogeny | 30124400 | Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil. | Jung MY, Islam MA, Gwak JH, Kim JG, Rhee SK | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002926 | 2018 | Agriculture, Ammonia/*metabolism, Archaea/*classification/genetics/isolation & purification, Base Composition, Genes, Archaeal, Glyceryl Ethers/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology | Transcriptome |
| Genetics | 30924222 | Genomic adaptation to eutrophication of ammonia-oxidizing archaea in the Pearl River estuary. | Zou D, Li Y, Kao SJ, Liu H, Li M | Environ Microbiol | 10.1111/1462-2920.14613 | 2019 | Ammonia/*metabolism, Archaea/*genetics/*physiology, California, China, Ecosystem, Estuaries, Eutrophication/*physiology, Genome, Archaeal/genetics, Genomics, Geologic Sediments/microbiology, Metals, Heavy/metabolism, Nitrification, Oxidation-Reduction, Oxidoreductases/*genetics, Phosphate Transport Proteins/genetics, Phylogeny, Rivers/microbiology | Metabolism |
| Metabolism | 31076641 | Iron requirements and uptake strategies of the globally abundant marine ammonia-oxidising archaeon, Nitrosopumilus maritimus SCM1. | Shafiee RT, Snow JT, Zhang Q, Rickaby REM | ISME J | 10.1038/s41396-019-0434-8 | 2019 | Ammonia/*metabolism, Ammonium Compounds/*metabolism, Archaea/genetics/isolation & purification/*metabolism, Ecosystem, Iron/*metabolism, Nitrification, Oxidation-Reduction, Seawater/*microbiology | Enzymology |
| Metabolism | 31696620 | Energy flux controls tetraether lipid cyclization in Sulfolobus acidocaldarius. | Zhou A, Weber Y, Chiu BK, Elling FJ, Cobban AB, Pearson A, Leavitt WD | Environ Microbiol | 10.1111/1462-2920.14851 | 2019 | Cell Membrane/chemistry/*metabolism, Cyclization, Energy Metabolism/physiology, Membrane Lipids/*metabolism, Sulfolobus acidocaldarius/chemistry/*metabolism, Temperature | Lipids |
| 34276593 | Characterization of the Exometabolome of Nitrosopumilus maritimus SCM1 by Liquid Chromatography-Ion Mobility Mass Spectrometry. | Law KP, He W, Tao J, Zhang C | Front Microbiol | 10.3389/fmicb.2021.658781 | 2021 | |||
| Metabolism | 34819551 | Structural insights into bifunctional thaumarchaeal crotonyl-CoA hydratase and 3-hydroxypropionyl-CoA dehydratase from Nitrosopumilus maritimus. | Destan E, Yuksel B, Tolar BB, Ayan E, Deutsch S, Yoshikuni Y, Wakatsuki S, Francis CA, DeMirci H | Sci Rep | 10.1038/s41598-021-02180-8 | 2021 | Acyl Coenzyme A/*metabolism, Archaea/*enzymology/genetics, Archaeal Proteins/chemistry/genetics/*metabolism, Carbon Dioxide/*metabolism, Catalysis, Crystallography, X-Ray, Enoyl-CoA Hydratase/chemistry/genetics/*metabolism, Models, Molecular, Protein Conformation, Structure-Activity Relationship, Substrate Specificity | Enzymology |
| 34925256 | A Novel Approach to Characterize the Lipidome of Marine Archaeon Nitrosopumilus maritimus by Ion Mobility Mass Spectrometry. | Law KP, He W, Tao J, Zhang C | Front Microbiol | 10.3389/fmicb.2021.735878 | 2021 | |||
| 35630397 | Distribution and Oxidation Rates of Ammonia-Oxidizing Archaea Influenced by the Coastal Upwelling off Eastern Hainan Island. | Liu H, Zhou P, Cheung S, Lu Y, Liu H, Jing H | Microorganisms | 10.3390/microorganisms10050952 | 2022 |
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 44010 | Wei Qin, Katherine R. Heal, Rasika Ramdasi, Julia N. Kobelt, Willm Martens-Habbena, Anthony D. Bertagnolli, Shady A. Amin, Christopher B. Walker, Hidetoshi Urakawa, Martin Könneke, Allan H. Devol, James W. Moffett, E. Virginia Armbrust, Grant J. Jensen, Anitra E. Ingalls, David A. Stahl | Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota | 10.1099/ijsem.0.002416 | IJSEM 67: 5067-5079 2017 | 29034851 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |