Strain identifier

BacDive ID: 141024

Type strain: Yes

Species: Caballeronia peredens

Strain Designation: NF100, R-16348

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-16348

NCBI tax ID(s): 1777132 (species)

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General

@ref: 43568

BacDive-ID: 141024

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Caballeronia peredens NF100 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 1777132
  • Matching level: species

strain history

  • @ref: 121673
  • history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-16348

doi: 10.13145/bacdive141024.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Caballeronia
  • species: Caballeronia peredens
  • full scientific name: Caballeronia peredens (Peeters et al. 2016) Dobritsa et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Burkholderia peredens

@ref: 43568

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Caballeronia

species: Caballeronia peredens

strain designation: NF100, R-16348

type strain: yes

Morphology

cell morphology

  • @ref: 121673
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 121673
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 63484
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63484
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
63484SoilJapanJPNAsia
121673Environment, SoilJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 121673
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caballeronia peredens LMG 29314GCA_001544595contigncbi1777132
66792Burkholderia sp. strain LMG 2931436773.21wgspatric36773
66792Caballeronia peredens LMG 293142724679463draftimg1777132

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.21no
anaerobicno98.555yes
halophileno93.66no
spore-formingno93.942no
glucose-utilyes90.626no
aerobicyes90.95yes
motileyes89.489no
flagellatedno81.766no
thermophileno99.255yes
glucose-fermentno90.695no

External links

@ref: 43568

culture collection no.: LMG 29314, CCUG 68415, CIP 110998

straininfo link

  • @ref: 96839
  • straininfo: 411640

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
27375597Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme PFront Microbiol10.3389/fmicb.2016.008772016
29863457Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris.Takeshita K, Tamaki H, Ohbayashi T, Meng XY, Sone T, Mitani Y, Peeters C, Kikuchi Y, Vandamme PInt J Syst Evol Microbiol10.1099/ijsem.0.0028482018PhylogenyAnimals, Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Digestive System/*microbiology, Fatty Acids/chemistry, Heteroptera/*microbiology, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Symbiosis, Ubiquinone/chemistryTranscriptome
31091185Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies.Dobritsa AP, Samadpour MInt J Syst Evol Microbiol10.1099/ijsem.0.0034312019PhylogenyBacterial Typing Techniques, Burkholderia/*classification, Burkholderiaceae/*classification, DNA, Bacterial/genetics, INDEL Mutation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Reproducibility of Results, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43568Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour SamadpourTransfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.10.1099/ijsem.0.002202IJSEM 67: 3846-3853 201728879843
63484Curators of the CCUGhttps://www.ccug.se/strain?id=68415Culture Collection University of Gothenburg (CCUG) (CCUG 68415)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
96839Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411640.1
121673Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110998Collection of Institut Pasteur (CIP 110998)