Name: Caballeronia peredens NF100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141024

Type strain:

Species: Caballeronia peredens

Strain Designation: NF100, R-16348

Culture col. no.: LMG 29314, CCUG 68415, CIP 110998

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-16348

NCBI tax ID(s): 1777132 (species)

SI-ID 411640

CCUG 68415

Section

Caballeronia peredens NF100 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia peredens**
	Full Scientific Name (LPSN)	Caballeronia peredens (Peeters et al. 2016) Dobritsa et al. 2017

Synonym

Burkholderia peredens

Information on morphological and physiological properties Morphology

[Ref.: #121673]	Gram stain	negative

[Ref.: #121673]	Cell shape	rod-shaped

[Ref.: #121673]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #121673]

Culture medium

CIP Medium 72

[Ref.: #121673]

Culture medium growth

[Ref.: #121673]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63484]			growth	30 °C

[Ref.: #63484]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63484]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63484]	Sample type/isolated from	Soil
[Ref.: #63484]	Country	Japan
[Ref.: #63484]	Country ISO 3 Code	JPN
[Ref.: #63484]	Continent	Asia

[Ref.: #121673]	Sample type/isolated from	Environment, Soil
[Ref.: #121673]	Country	Japan
[Ref.: #121673]	Country ISO 3 Code	JPN
[Ref.: #121673]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121673]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia peredens LMG 29314	GCA_001544595	contig	GenBank	1777132 tax ID	*
[Ref.: #66792]	Burkholderia sp. strain LMG 29314	36773.21	wgs	PATRIC	36773 tax ID	*
[Ref.: #66792]	Caballeronia peredens LMG 29314	2724679463	draft	JGI IMG/M	1777132 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. strain LMG 29314 PATRIC: 36773.21
[Ref.: #69480]	gram-positive	no	98.21	no
[Ref.: #69480]	anaerobic	no	98.555	yes
[Ref.: #69480]	halophile	no	93.66	no
[Ref.: #69480]	spore-forming	no	93.942	no
[Ref.: #69480]	glucose-util	yes	90.626	no
[Ref.: #69480]	aerobic	yes	90.95	yes
[Ref.: #69480]	motile	yes	89.489	no
[Ref.: #69480]	flagellated	no	81.766	no
[Ref.: #69480]	thermophile	no	99.255	yes
[Ref.: #69480]	glucose-ferment	no	90.695	no

Availability in culture collections External links

[Ref.: #43568]

Culture collection no.

LMG 29314, CCUG 68415, CIP 110998

[Ref.: #96839]

SI-ID 411640

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris.	Takeshita K, Tamaki H, Ohbayashi T, Meng XY, Sone T, Mitani Y, Peeters C, Kikuchi Y, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002848	2018	*
Phylogeny	Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies.	Dobritsa AP, Samadpour M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003431	2019	*
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43568

Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )

#63484 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68415

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96839

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411640.1 )

#121673 Collection of Institut Pasteur ; Curators of the CIP; CIP 110998
* These data were automatically processed and therefore are not curated

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Burkholderia sp. strain LMG 29314

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