Strain identifier
BacDive ID: 141020
Type strain: 
Species: Caballeronia fortuita
Strain Designation: R-50722
Strain history: CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50722
NCBI tax ID(s): 1777138 (species)
version 8.1 (current version)
General
@ref: 43568
BacDive-ID: 141020
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Caballeronia fortuita R-50722 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Rhizosphere soil.
NCBI tax id
- NCBI tax id: 1777138
- Matching level: species
strain history
- @ref: 119436
- history: CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50722
doi: 10.13145/bacdive141020.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia fortuita
- full scientific name: Caballeronia fortuita (Peeters et al. 2016) Dobritsa et al. 2017
synonyms
- @ref: 20215
- synonym: Burkholderia fortuita
@ref: 43568
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia fortuita
strain designation: R-50722
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | negative | 99.973 | ||
| 119436 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
- @ref: 119436
- name: CIP Medium 72
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
culture temp
- @ref: 63478
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63478
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.992 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | country | origin.country | continent | isolation date |
|---|---|---|---|---|---|---|
| 63478 | Rhizosphere soil | 2013 | South Africa | ZAF | Africa | |
| 119436 | Environment, Rhizosphere soil | South Africa | ZAF | Africa | 2013-01-02 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host Body-Site | #Plant | #Rhizosphere |
| #Host | #Plants |
Safety information
risk assessment
- @ref: 119436
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caballeronia fortuita LMG 29320 | GCA_001544835 | contig | ncbi | 1777138 |
| 66792 | Burkholderia sp. strain LMG 29320 | 36773.27 | wgs | patric | 36773 |
| 66792 | Caballeronia fortuita LMG 29320 | 2713896992 | draft | img | 1777138 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.217 | no |
| anaerobic | no | 97.728 | no |
| halophile | no | 94.283 | no |
| spore-forming | no | 94.007 | no |
| glucose-util | yes | 84.625 | no |
| motile | yes | 89.239 | no |
| flagellated | no | 81.89 | no |
| thermophile | no | 99.332 | no |
| aerobic | yes | 89.204 | yes |
| glucose-ferment | no | 90.35 | no |
External links
@ref: 43568
culture collection no.: LMG 29320, CCUG 68409, CIP 111004
straininfo link
- @ref: 96835
- straininfo: 408793
literature
- Pubmed-ID: 27375597
- title: Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.
- authors: Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2016.00877
- year: 2016
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43568 | Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour | Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov. | 10.1099/ijsem.0.002202 | IJSEM 67: 3846-3853 2017 | 28879843 | |
| 63478 | Curators of the CCUG | https://www.ccug.se/strain?id=68409 | Culture Collection University of Gothenburg (CCUG) (CCUG 68409) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 96835 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408793.1 | |||
| 119436 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111004 | Collection of Institut Pasteur (CIP 111004) |