Strain identifier
BacDive ID: 140834
Type strain: 
Species: Halanaeroarchaeum sulfurireducens
Strain Designation: HSR2
Strain history: D. Y. Sorokin; Delft Univ. of Technol., Netherlands; HSR2.
NCBI tax ID(s): 1604004 (species)
version 7.1 (current version)
General
@ref: 43637
BacDive-ID: 140834
keywords: genome sequence, 16S sequence, Archaea, obligate anaerobe, Gram-negative, coccus-shaped
description: Halanaeroarchaeum sulfurireducens HSR2 is an obligate anaerobe, Gram-negative, coccus-shaped archaeon that was isolated from anaerobic sediments of chloride-sulfate hypersaline lakes.
NCBI tax id
- NCBI tax id: 1604004
- Matching level: species
strain history: D. Y. Sorokin; Delft Univ. of Technol., Netherlands; HSR2.
doi: 10.13145/bacdive140834.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/euryarchaeota
- domain: Archaea
- phylum: Euryarchaeota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halanaeroarchaeum
- species: Halanaeroarchaeum sulfurireducens
- full scientific name: Halanaeroarchaeum sulfurireducens Sorokin et al. 2016
@ref: 43637
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halanaeroarchaeum
species: Halanaeroarchaeum sulfurireducens
strain designation: HSR2
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 43637 | negative | 1-2 µm | 0.5-1.5 µm | coccus-shaped | no | |
| 69480 | negative | 98.503 |
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43637 | positive | optimum | 37-40 | |
| 43637 | positive | maximum | 46 | thermophilic |
| 67770 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 43637 | positive | growth | 6.7-8 |
| 43637 | positive | optimum | 7-7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 43637
- oxygen tolerance: obligate anaerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.853
halophily
| @ref | salt | growth | tested relation | concentration | halophily level | confidence |
|---|---|---|---|---|---|---|
| 43637 | NaCl | positive | growth | 3-5 M | ||
| 43637 | NaCl | positive | optimum | 4 M | extremely halophilic | |
| 69480 | halophilic | 99.999 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43637 | 30089 | acetate | + | carbon source |
| 43637 | 15361 | pyruvate | + | carbon source |
| 43637 | 30089 | acetate | + | electron donor |
| 43637 | 15361 | pyruvate | + | electron donor |
| 43637 | 28938 | ammonium | + | nitrogen source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | isolation date |
|---|---|---|---|---|---|---|
| 43637 | anaerobic sediments of chloride-sulfate hypersaline lakes | Kulunda Steppe, Altai | Russia | RUS | Asia | 2009-2013 |
| 67770 | Mixed anaerobic sulfur-rich sediment samples from the Kukunda Steppe hypersaline lake | Altai | Russia | RUS |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Condition | #Anoxic (anaerobic) | |
| #Condition | #Saline | |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 43637
- description: 16S rRNA gene sequence
- accession: KM875608
- database: nuccore
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halanaeroarchaeum sulfurireducens HSR2 | GCA_001011115 | complete | ncbi | 1604004 |
| 67770 | Halanaeroarchaeum sulfurireducens strain HSR2, complete genome | CP008874 | ena | 1604004 |
GC content
- @ref: 43637
- GC-content: 62.8
- method: genome sequence analysis
External links
@ref: 43637
culture collection no.: JCM 30661, UNIQEM U935
literature
- topic: Phylogeny
- Pubmed-ID: 27031647
- title: Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake.
- authors: Sorokin DY, Kublanov IV, Yakimov MM, Rijpstra WIC, Sinninghe Damste JS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001041
- year: 2016
- mesh: Base Composition, DNA, Archaeal/genetics, Geologic Sediments/microbiology, Halobacteriales/*classification/genetics/isolation & purification, Lakes/*microbiology, Oxidation-Reduction, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, *Salinity, Salts, Sequence Analysis, DNA, Sulfur/*metabolism
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 43637 | Dimitry Y. Sorokin, Ilya V. Kublanov, Mikhail M. Yakimov, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté | Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake | 10.1099/ijsem.0.001041 | IJSEM 66: 2377-2381 2016 | 27031647 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |