Strain identifier

BacDive ID: 140810

Type strain: Yes

Species: Pseudoruegeria aestuarii

Strain Designation: MME-001

Strain history: M.-J. Seo; Incheon Natl. Univ., South Korea; MME-001.

NCBI tax ID(s): 1663016 (species)

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General

@ref: 43597

BacDive-ID: 140810

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Pseudoruegeria aestuarii MME-001 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 1663016
  • Matching level: species

strain history

  • @ref: 67770
  • history: M.-J. Seo; Incheon Natl. Univ., South Korea; MME-001.

doi: 10.13145/bacdive140810.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Pseudoruegeria
  • species: Pseudoruegeria aestuarii
  • full scientific name: Pseudoruegeria aestuarii Cha et al. 2016

@ref: 43597

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Pseudoruegeria

species: Pseudoruegeria aestuarii

strain designation: MME-001

type strain: yes

Morphology

cell morphology

  • @ref: 43597
  • gram stain: negative
  • cell length: 2.4-2.5 µm
  • cell width: 0.5-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43597
  • colony size: 1 mm
  • colony color: Pale yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA agar

Culture and growth conditions

culture medium

  • @ref: 43597
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43597positivegrowth15-40
43597positiveoptimum25-30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43597positivegrowth7-9alkaliphile
43597positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43597
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43597NaClpositivegrowth1-7 %(w/v)
43597NaClpositiveoptimum2-3 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4359716150benzoate-carbon source
4359715729L-ornithine-carbon source
4359716634raffinose-carbon source
4359716150benzoate-energy source
4359715729L-ornithine-energy source
4359716634raffinose-energy source
4359717234glucose-fermentation
43597casein-hydrolysis
4359717895L-tyrosine-hydrolysis
4359728017starch-hydrolysis
4359753424tween 20-hydrolysis
4359753423tween 40-hydrolysis
4359753426tween 80-hydrolysis
4359717632nitrate-reduction
4359717057cellobiose+builds acid from
4359715824D-fructose+builds acid from
4359712936D-galactose+builds acid from
4359717634D-glucose+builds acid from
4359716024D-mannose+builds acid from
4359716988D-ribose+builds acid from
4359765327D-xylose+builds acid from
4359730849L-arabinose+builds acid from
4359762345L-rhamnose+builds acid from
4359728053melibiose+builds acid from
4359727082trehalose+builds acid from
4359730089acetate+carbon source
4359717057cellobiose+carbon source
4359716947citrate+carbon source
4359715824D-fructose+carbon source
4359712936D-galactose+carbon source
4359717634D-glucose+carbon source
4359716899D-mannitol+carbon source
4359716024D-mannose+carbon source
4359716988D-ribose+carbon source
4359717924D-sorbitol+carbon source
4359765327D-xylose+carbon source
4359725115malate+carbon source
4359715740formate+carbon source
4359717754glycerol+carbon source
4359717268myo-inositol+carbon source
4359730849L-arabinose+carbon source
4359729985L-glutamate+carbon source
4359762345L-rhamnose+carbon source
4359717716lactose+carbon source
4359717306maltose+carbon source
4359728053melibiose+carbon source
4359715361pyruvate+carbon source
4359730031succinate+carbon source
4359717992sucrose+carbon source
4359727082trehalose+carbon source
4359730089acetate+energy source
4359717057cellobiose+energy source
4359716947citrate+energy source
4359715824D-fructose+energy source
4359712936D-galactose+energy source
4359717634D-glucose+energy source
4359716899D-mannitol+energy source
4359716024D-mannose+energy source
4359716988D-ribose+energy source
4359717924D-sorbitol+energy source
4359765327D-xylose+energy source
4359725115malate+energy source
4359715740formate+energy source
4359717754glycerol+energy source
4359717268myo-inositol+energy source
4359730849L-arabinose+energy source
4359729985L-glutamate+energy source
4359762345L-rhamnose+energy source
4359717716lactose+energy source
4359717306maltose+energy source
4359728053melibiose+energy source
4359715361pyruvate+energy source
4359730031succinate+energy source
4359717992sucrose+energy source
4359727082trehalose+energy source
435975291gelatin+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
435973393carbenicillinyesyes100 µg/mL
4359748923erythromycinyesyes25 µg/mL
4359717833gentamicinyesyes30 µg/mL
435976104kanamycinyesyes30 µg/mL
435977507neomycinyesyes30 µg/mL
4359728368novobiocinyesyes10 µg/mL
4359717076streptomycinyesyes50 µg/mL
4359718208penicillin gyesyes20 Unit
435978309polymyxin byesyes100 Unit
4359728971ampicillinyesyes10 µg/mL
435973542cephalothinyesyes30 µg/mL
43597100241ciprofloxacinyesyes10 µg/mL
435976472lincomycinyesyes15 µg/mL
43597100246norfloxacinyesyes20 µg/mL
4359727902tetracyclineyesyes30 µg/mL

metabolite production

  • @ref: 43597
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43597protease+
43597alkaline phosphatase+3.1.3.1
43597esterase (C 4)+
43597esterase Lipase (C 8)+
43597leucine arylamidase+3.4.11.1
43597acid phosphatase+3.1.3.2
43597naphthol-AS-BI-phosphohydrolase+
43597beta-galactosidase+3.2.1.23
43597alpha-glucosidase+3.2.1.20
43597beta-glucosidase+3.2.1.21
43597arginine dihydrolase-3.5.3.6
43597urease-3.5.1.5
43597lipase (C 14)-
43597valine arylamidase-
43597cystine arylamidase-3.4.11.3
43597trypsin-3.4.21.4
43597alpha-chymotrypsin-3.4.21.1
43597alpha-galactosidase-3.2.1.22
43597beta-glucuronidase-3.2.1.31
43597N-acetyl-beta-glucosaminidase-3.2.1.52
43597alpha-mannosidase-3.2.1.24
43597alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
43597tidal flat sedimentMuui-do, IncheonRepublic of KoreaKORAsia37.404126.4132014-09
67770Tidal flat of Muui-doRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_172362.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1697;97_2031;98_95104;99_172362&stattab=map
  • Last taxonomy: Pseudoruegeria aestuarii
  • 16S sequence: KP410678
  • Sequence Identity:
  • Total samples: 547
  • soil counts: 2
  • aquatic counts: 534
  • animal counts: 11

Sequence information

16S sequences

  • @ref: 43597
  • description: 16S rRNA gene sequence
  • accession: KP410678
  • database: nuccore

GC content

  • @ref: 43597
  • GC-content: 62
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43597

culture collection no.: KCCM 43133, JCM 30751

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27189158Pseudoruegeria aestuarii sp. nov., of the family Rhodobacteraceae, isolated from a tidal flat.Cha IT, Park I, Lee HW, Lee H, Park JM, Roh SW, Choi HJ, Nam YD, Lee YK, Seo MJInt J Syst Evol Microbiol10.1099/ijsem.0.0011562016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny35439113Algiphilus acroporae sp. nov. and Coraliihabitans acroporae gen. nov. sp. nov., isolated from scleractinian coral Acropora digitifera.Sun H, Zheng H, Liao B, Chen B, Li A, Xiao BInt J Syst Evol Microbiol10.1099/ijsem.0.0053212022Animals, *Anthozoa/microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylglycerols/analysis, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43597In-Tae Cha, Inhye Park, Hae-Won Lee, Hyunjin Lee, Jung-Min Park, Seong Woon Roh, Hak-Jong Choi, Young-Do Nam, Yoo Kyung Lee, Myung-Ji SeoPseudoruegeria aestuarii sp. nov., of the family Rhodobacteraceae, isolated from a tidal flat10.1099/ijsem.0.001156IJSEM 66: 3125-3131 201627189158
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/