Name: Pseudoruegeria aestuarii MME-001
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140810

Type strain:

Species: Pseudoruegeria aestuarii

Strain Designation: MME-001

Culture col. no.: KCCM 43133, JCM 30751

Strain history: M.-J. Seo; Incheon Natl. Univ., South Korea; MME-001.

NCBI tax ID(s): 1663016 (species)

Special Collections

Section

Pseudoruegeria aestuarii MME-001 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from tidal flat sediment.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudoruegeria*
	Species	**Pseudoruegeria aestuarii**
	Full Scientific Name (LPSN)	Pseudoruegeria aestuarii Cha et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43597]	Gram stain	negative

[Ref.: #43597]	Cell length	2.4-2.5 µm

[Ref.: #43597]	Cell width	0.5-0.6 µm

[Ref.: #43597]	Cell shape	rod-shaped

[Ref.: #43597]	Motility	no

[Ref.: #43597]	Colony size	1 mm
[Ref.: #43597]	Colony color	Pale yellow
[Ref.: #43597]	Colony shape	circular
[Ref.: #43597]	Incubation period	3 days
[Ref.: #43597]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43597]

Culture medium

Marine agar (MA)

[Ref.: #43597]

Culture medium growth

		Temperature
[Ref.: #43597]	growth	15-40 °C
[Ref.: #43597]	optimum	25-30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43597]			optimum	7
[Ref.: #43597]			growth	7-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43597]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43597]		NaCl		growth	1-7	%(w/v)
[Ref.: #43597]		NaCl		optimum	2-3	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43597]	acetate ChEBI	+	carbon source
[Ref.: #43597]	acetate ChEBI	+	energy source
[Ref.: #43597]	benzoate ChEBI	-	carbon source
[Ref.: #43597]	benzoate ChEBI	-	energy source
[Ref.: #43597]	casein	-	hydrolysis
[Ref.: #43597]	cellobiose ChEBI	+	builds acid from
[Ref.: #43597]	cellobiose ChEBI	+	carbon source
[Ref.: #43597]	cellobiose ChEBI	+	energy source
[Ref.: #43597]	citrate ChEBI	+	carbon source
[Ref.: #43597]	citrate ChEBI	+	energy source
[Ref.: #43597]	D-fructose ChEBI	+	builds acid from
[Ref.: #43597]	D-fructose ChEBI	+	carbon source
[Ref.: #43597]	D-fructose ChEBI	+	energy source
[Ref.: #43597]	D-galactose ChEBI	+	builds acid from
[Ref.: #43597]	D-galactose ChEBI	+	carbon source
[Ref.: #43597]	D-galactose ChEBI	+	energy source
[Ref.: #43597]	D-glucose ChEBI	+	builds acid from
[Ref.: #43597]	D-glucose ChEBI	+	carbon source
[Ref.: #43597]	D-glucose ChEBI	+	energy source
[Ref.: #43597]	D-mannitol ChEBI	+	carbon source
[Ref.: #43597]	D-mannitol ChEBI	+	energy source
[Ref.: #43597]	D-mannose ChEBI	+	builds acid from
[Ref.: #43597]	D-mannose ChEBI	+	carbon source
[Ref.: #43597]	D-mannose ChEBI	+	energy source
[Ref.: #43597]	D-ribose ChEBI	+	builds acid from
[Ref.: #43597]	D-ribose ChEBI	+	carbon source
[Ref.: #43597]	D-ribose ChEBI	+	energy source
[Ref.: #43597]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43597]	D-sorbitol ChEBI	+	energy source
[Ref.: #43597]	D-xylose ChEBI	+	builds acid from
[Ref.: #43597]	D-xylose ChEBI	+	carbon source
[Ref.: #43597]	D-xylose ChEBI	+	energy source
[Ref.: #43597]	formate ChEBI	+	carbon source
[Ref.: #43597]	formate ChEBI	+	energy source
[Ref.: #43597]	gelatin ChEBI	+	hydrolysis
[Ref.: #43597]	glucose ChEBI	-	fermentation
[Ref.: #43597]	glycerol ChEBI	+	carbon source
[Ref.: #43597]	glycerol ChEBI	+	energy source
[Ref.: #43597]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43597]	L-arabinose ChEBI	+	carbon source
[Ref.: #43597]	L-arabinose ChEBI	+	energy source
[Ref.: #43597]	L-glutamate ChEBI	+	carbon source
[Ref.: #43597]	L-glutamate ChEBI	+	energy source
[Ref.: #43597]	L-ornithine ChEBI	-	carbon source
[Ref.: #43597]	L-ornithine ChEBI	-	energy source
[Ref.: #43597]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43597]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43597]	L-rhamnose ChEBI	+	energy source
[Ref.: #43597]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43597]	lactose ChEBI	+	carbon source
[Ref.: #43597]	lactose ChEBI	+	energy source
[Ref.: #43597]	malate ChEBI	+	carbon source
[Ref.: #43597]	malate ChEBI	+	energy source
[Ref.: #43597]	maltose ChEBI	+	carbon source
[Ref.: #43597]	maltose ChEBI	+	energy source
[Ref.: #43597]	melibiose ChEBI	+	builds acid from
[Ref.: #43597]	melibiose ChEBI	+	carbon source
[Ref.: #43597]	melibiose ChEBI	+	energy source
[Ref.: #43597]	myo-inositol ChEBI	+	carbon source
[Ref.: #43597]	myo-inositol ChEBI	+	energy source
[Ref.: #43597]	nitrate ChEBI	-	reduction
[Ref.: #43597]	pyruvate ChEBI	+	carbon source
[Ref.: #43597]	pyruvate ChEBI	+	energy source
[Ref.: #43597]	raffinose ChEBI	-	carbon source
[Ref.: #43597]	raffinose ChEBI	-	energy source
[Ref.: #43597]	starch ChEBI	-	hydrolysis
[Ref.: #43597]	succinate ChEBI	+	carbon source
[Ref.: #43597]	succinate ChEBI	+	energy source
[Ref.: #43597]	sucrose ChEBI	+	carbon source
[Ref.: #43597]	sucrose ChEBI	+	energy source
[Ref.: #43597]	trehalose ChEBI	+	builds acid from
[Ref.: #43597]	trehalose ChEBI	+	carbon source
[Ref.: #43597]	trehalose ChEBI	+	energy source
[Ref.: #43597]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43597]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43597]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43597]	ampicillin ChEBI				yes	10	µg/mL
[Ref.: #43597]	carbenicillin ChEBI	yes	100	µg/mL
[Ref.: #43597]	cephalothin ChEBI				yes	30	µg/mL
[Ref.: #43597]	ciprofloxacin ChEBI				yes	10	µg/mL
[Ref.: #43597]	erythromycin ChEBI	yes	25	µg/mL
[Ref.: #43597]	gentamicin ChEBI	yes	30	µg/mL
[Ref.: #43597]	kanamycin ChEBI	yes	30	µg/mL
[Ref.: #43597]	lincomycin ChEBI				yes	15	µg/mL
[Ref.: #43597]	neomycin ChEBI	yes	30	µg/mL
[Ref.: #43597]	norfloxacin ChEBI				yes	20	µg/mL
[Ref.: #43597]	novobiocin ChEBI	yes	10	µg/mL
[Ref.: #43597]	penicillin g ChEBI	yes	20	Unit
[Ref.: #43597]	polymyxin b ChEBI	yes	100	Unit
[Ref.: #43597]	streptomycin ChEBI	yes	50	µg/mL
[Ref.: #43597]	tetracycline ChEBI				yes	30	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43597]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43597]	acid phosphatase	+	3.1.3.2
[Ref.: #43597]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43597]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43597]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43597]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43597]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43597]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43597]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43597]	beta-galactosidase	+	3.2.1.23
[Ref.: #43597]	beta-glucosidase	+	3.2.1.21
[Ref.: #43597]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43597]	cystine arylamidase	-	3.4.11.3
[Ref.: #43597]	esterase (C 4)	+
[Ref.: #43597]	esterase Lipase (C 8)	+
[Ref.: #43597]	leucine arylamidase	+	3.4.11.1
[Ref.: #43597]	lipase (C 14)	-
[Ref.: #43597]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43597]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43597]	protease	+
[Ref.: #43597]	trypsin	-	3.4.21.4
[Ref.: #43597]	urease	-	3.5.1.5
[Ref.: #43597]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43597]	Sample type/isolated from	tidal flat sediment
[Ref.: #43597]	Geographic location (country and/or sea, region)	Muui-do, Incheon
[Ref.: #43597]	Country	Republic of Korea
[Ref.: #43597]	Country ISO 3 Code	KOR
[Ref.: #43597]	Continent	Asia
[Ref.: #43597]	Geographic location	37.4040°/126.4130°
[Ref.: #43597]	Isolation date	2014-09

[Ref.: #67770]	Sample type/isolated from	Tidal flat of Muui-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP410678 (>99% sequence identity) for Pseudoruegeria aestuarii from Microbeatlas

Aquatic Samples	534
Soil Samples	2
Animal Samples	11
Plant Samples
Total Samples	547

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43597]	Pseudoruegeria aestuarii strain MME-001 16S ribosomal RNA gene, partial sequence	KP410678		GenBank ENA

[Ref.: #43597]

GC-content

62 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43597]

Culture collection no.

KCCM 43133, JCM 30751

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoruegeria aestuarii sp. nov., of the family Rhodobacteraceae, isolated from a tidal flat.	Cha IT, Park I, Lee HW, Lee H, Park JM, Roh SW, Choi HJ, Nam YD, Lee YK, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001156	2016	*
Phylogeny	Algiphilus acroporae sp. nov. and Coraliihabitans acroporae gen. nov. sp. nov., isolated from scleractinian coral Acropora digitifera.	Sun H, Zheng H, Liao B, Chen B, Li A, Xiao B	Int J Syst Evol Microbiol	10.1099/ijsem.0.005321	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43597

In-Tae Cha, Inhye Park, Hae-Won Lee, Hyunjin Lee, Jung-Min Park, Seong Woon Roh, Hak-Jong Choi, Young-Do Nam, Yoo Kyung Lee, Myung-Ji Seo: Pseudoruegeria aestuarii sp. nov., of the family Rhodobacteraceae, isolated from a tidal flat. IJSEM 66: 3125 - 3131 2016 ( DOI 10.1099/ijsem.0.001156 , PubMed 27189158 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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