Strain identifier

BacDive ID: 140788

Type strain: Yes

Species: Oryzisolibacter propanilivorax

Strain Designation: EPL6

NCBI tax ID(s): 1527607 (species)

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General

@ref: 43566

BacDive-ID: 140788

keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoorganotroph, Gram-negative, motile, rod-shaped, colony-forming

description: Oryzisolibacter propanilivorax EPL6 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from a propanil and 3,4-DCA enrichment culture produced from rice paddy soil.

NCBI tax id

  • NCBI tax id: 1527607
  • Matching level: species

doi: 10.13145/bacdive140788.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Oryzisolibacter
  • species: Oryzisolibacter propanilivorax
  • full scientific name: Oryzisolibacter propanilivorax Vaz-Moreira et al. 2017

@ref: 43566

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Oryzisolibacter

species: Oryzisolibacter propanilivorax

strain designation: EPL6

type strain: yes

Morphology

cell morphology

  • @ref: 43566
  • gram stain: negative
  • cell length: 1.9 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43566
  • colony size: 2 mm
  • colony color: ligh yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: LA plates

Culture and growth conditions

culture medium

  • @ref: 43566
  • name: LA plates
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43566positivegrowth15-37
62852positivegrowth30mesophilic

culture pH

  • @ref: 43566
  • ability: positive
  • type: growth
  • pH: 6-9
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43566aerobe
62852aerobe

nutrition type

  • @ref: 43566
  • type: chemoorganotroph

halophily

  • @ref: 43566
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.1-4 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4356615963ribitol-assimilation
4356627613amygdalin-assimilation
4356618305arbutin-assimilation
4356627689decanoate-assimilation
4356617057cellobiose-assimilation
4356617108D-arabinose-assimilation
4356618333D-arabitol-assimilation
4356615824D-fructose-assimilation
4356628847D-fucose-assimilation
4356612936D-galactose-assimilation
4356662318D-lyxose-assimilation
4356616899D-mannitol-assimilation
4356616024D-mannose-assimilation
4356616988D-ribose-assimilation
4356617924D-sorbitol-assimilation
4356616443D-tagatose-assimilation
4356665327D-xylose-assimilation
4356616813galactitol-assimilation
4356617113erythritol-assimilation
435664853esculin-assimilation
4356628066gentiobiose-assimilation
4356617234glucose-assimilation
4356628087glycogen-assimilation
4356617268myo-inositol-assimilation
4356615443inulin-assimilation
4356630849L-arabinose-assimilation
4356618403L-arabitol-assimilation
4356618287L-fucose-assimilation
4356662345L-rhamnose-assimilation
4356617266L-sorbose-assimilation
4356665328L-xylose-assimilation
4356617716lactose-assimilation
4356617306maltose-assimilation
435666731melezitose-assimilation
4356628053melibiose-assimilation
43566320061methyl alpha-D-glucopyranoside-assimilation
4356643943methyl alpha-D-mannoside-assimilation
4356674863methyl beta-D-xylopyranoside-assimilation
43566506227N-acetylglucosamine-assimilation
4356618401phenylacetate-assimilation
43566potassium 2-dehydro-D-gluconate-assimilation
43566potassium 5-dehydro-D-gluconate-assimilation
4356616634raffinose-assimilation
4356617814salicin-assimilation
4356628017starch-assimilation
4356617992sucrose-assimilation
4356627082trehalose-assimilation
4356632528turanose-assimilation
4356617151xylitol-assimilation
4356627613amygdalin-fermentation
4356622599arabinose-fermentation
4356617234glucose-fermentation
4356617268myo-inositol-fermentation
4356637684mannose-fermentation
4356628053melibiose-fermentation
4356626546rhamnose-fermentation
4356630911sorbitol-fermentation
4356617992sucrose-fermentation
435664853esculin-hydrolysis
4356617128adipate+assimilation
4356616947citrate+assimilation
4356617754glycerol+assimilation
4356625115malate+assimilation
4356632032potassium gluconate+assimilation
4356653258sodium citrate+assimilation
4356617632nitrate+reduction
4356616301nitrite+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4356616136hydrogen sulfideno
4356635581indoleno
4356615688acetoinyes

enzymes

@refvalueactivityec
43566tryptophan deaminase+4.1.99.1
43566esterase (C 4)+
43566esterase Lipase (C 8)+
43566leucine arylamidase+3.4.11.1
43566valine arylamidase+
43566naphthol-AS-BI-phosphohydrolase+
43566gelatinase+/-
43566alkaline phosphatase+/-3.1.3.1
43566cystine arylamidase+/-3.4.11.3
43566acid phosphatase-3.1.3.2
43566catalase+1.11.1.6
43566cytochrome oxidase+1.9.3.1
43566urease-3.5.1.5
43566arginine dihydrolase-3.5.3.6
43566lysine decarboxylase-4.1.1.18
43566ornithine decarboxylase-4.1.1.17
43566lipase (C 14)-
43566trypsin-3.4.21.4
43566alpha-chymotrypsin-3.4.21.1
43566alpha-galactosidase-3.2.1.22
43566beta-galactosidase-3.2.1.23
43566beta-glucuronidase-3.2.1.31
43566alpha-glucosidase-3.2.1.20
43566beta-glucosidase-3.2.1.21
43566N-acetyl-beta-glucosaminidase-3.2.1.52
43566alpha-mannosidase-3.2.1.24
43566alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation datesampling date
43566a propanil and 3,4-DCA enrichment culture produced from rice paddy soilBaixo MondegoPortugalPRTEurope40.183-8.6832007
62852Bioreactor degrading propanil herbicidePortoPortugalPRTEurope2009-08-05

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_65837.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_491;97_2471;98_46475;99_65837&stattab=map
  • Last taxonomy: Alicycliphilus
  • 16S sequence: LM653274
  • Sequence Identity:
  • Total samples: 65
  • aquatic counts: 40
  • animal counts: 25

Sequence information

16S sequences

  • @ref: 43566
  • description: 16S rRNA gene sequence
  • accession: LM653274
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Oryzisolibacter propanilivorax EPL6GCA_900103645contigncbi1527607
66792Oryzisolibacter propanilivorax EPL62671180222draftimg1527607

GC content

  • @ref: 43566
  • GC-content: 69.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43566

culture collection no.: LMG 28427, CECT 8927, CCUG 62476

straininfo link

  • @ref: 96791
  • straininfo: 412261

literature

  • topic: Phylogeny
  • Pubmed-ID: 28895512
  • title: Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium.
  • authors: Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002184
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, Comamonadaceae/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Oryza, Phospholipids/chemistry, *Phylogeny, Portugal, Propanil/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43566Ivone Vaz-Moreira, Carlos Narciso-da-Rocha, Ana Rita Lopes, Gilda Carvalho, Alexandre Lobo-da-Cunha, William B. Whitman, Cindy Snauwaert, Peter Vandamme, Celia M. Manaia, Olga C. NunesOryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium10.1099/ijsem.0.002184IJSEM 67: 3752-3758 201728895512
62852Curators of the CCUGhttps://www.ccug.se/strain?id=62476Culture Collection University of Gothenburg (CCUG) (CCUG 62476)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96791Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412261.1