Strain identifier

BacDive ID: 140768

Type strain: Yes

Species: Lentibacillus sediminis

Strain Designation: 0W14

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1940529 (species)

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General

@ref: 43546

BacDive-ID: 140768

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Lentibacillus sediminis 0W14 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from marine saltern.

NCBI tax id

  • NCBI tax id: 1940529
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongjun Du, Shandong Univ.

doi: 10.13145/bacdive140768.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Lentibacillus
  • species: Lentibacillus sediminis
  • full scientific name: Lentibacillus sediminis Guo et al. 2017

@ref: 43546

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Lentibacillus

species: Lentibacillus sediminis

strain designation: 0W14

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
43546positive1.2-2.3 µm0.4-0.6 µmrod-shapedyesperitrichous
67771rod-shapedyesperitrichous
67771positive

colony morphology

  • @ref: 43546
  • colony color: cream to pink
  • incubation period: 2 days
  • medium used: MA agar

Culture and growth conditions

culture medium

  • @ref: 43546
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperature
43546positivegrowth16-45
43546positiveoptimum37
67771positivegrowth33-37

culture pH

@refabilitytypepHPH range
43546positivegrowth7-9.5alkaliphile
43546positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43546facultative anaerobe
67771facultative anaerobe

spore formation

@refspore descriptiontype of sporespore formation
43546oval, subterminal; formed in swollen sporangiaendosporeyes
67771endosporeyes

halophily

@refsaltgrowthtested relationconcentration
43546NaClpositivegrowth1-20 %(w/v)
43546NaClpositiveoptimum6 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4354616947citrate-carbon source
4354685146carboxymethylcellulose-hydrolysis
4354628017starch-hydrolysis
4354653424tween 20-hydrolysis
4354653426tween 80-hydrolysis
4354617057cellobiose+builds acid from
4354615824D-fructose+builds acid from
4354612936D-galactose+builds acid from
4354617634D-glucose+builds acid from
4354662318D-lyxose+builds acid from
4354616899D-mannitol+builds acid from
4354616024D-mannose+builds acid from
4354616988D-ribose+builds acid from
4354616443D-tagatose+builds acid from
4354617266L-sorbose+builds acid from
4354617306maltose+builds acid from
43546potassium 5-dehydro-D-gluconate+builds acid from
4354617814salicin+builds acid from
4354617992sucrose+builds acid from
4354627082trehalose+builds acid from
4354632528turanose+builds acid from
43546739183-O-methyl-D-glucose+carbon source
4354613705acetoacetate+carbon source
4354617925alpha-D-glucose+carbon source
4354617057cellobiose+carbon source
4354618333D-arabitol+carbon source
4354629990D-aspartate+carbon source
4354615824D-fructose+carbon source
4354628847D-fucose+carbon source
4354612936D-galactose+carbon source
4354616899D-mannitol+carbon source
4354616024D-mannose+carbon source
4354617924D-sorbitol+carbon source
4354623652dextrin+carbon source
4354615740formate+carbon source
4354628066gentiobiose+carbon source
4354617754glycerol+carbon source
4354617596inosine+carbon source
4354618287L-fucose+carbon source
4354662345L-rhamnose+carbon source
4354617115L-serine+carbon source
4354617716lactose+carbon source
4354617306maltose+carbon source
4354628053melibiose+carbon source
4354637657methyl D-glucoside+carbon source
4354617268myo-inositol+carbon source
4354663154N-acetyl-beta-D-mannosamine+carbon source
43546506227N-acetylglucosamine+carbon source
4354617272propionate+carbon source
4354616634raffinose+carbon source
4354617814salicin+carbon source
4354617164stachyose+carbon source
4354617992sucrose+carbon source
4354627082trehalose+carbon source
4354632528turanose+carbon source
4354653423tween 40+carbon source
4354653423tween 40+hydrolysis
4354653425tween 60+hydrolysis
43546739183-O-methyl-D-glucose+oxidation
4354613705acetoacetate+oxidation
4354617925alpha-D-glucose+oxidation
4354617057cellobiose+oxidation
4354618333D-arabitol+oxidation
4354629990D-aspartate+oxidation
4354615824D-fructose+oxidation
4354628847D-fucose+oxidation
4354612936D-galactose+oxidation
4354616899D-mannitol+oxidation
4354616024D-mannose+oxidation
4354617924D-sorbitol+oxidation
4354623652dextrin+oxidation
4354615740formate+oxidation
4354628066gentiobiose+oxidation
4354617754glycerol+oxidation
4354617596inosine+oxidation
4354618287L-fucose+oxidation
4354662345L-rhamnose+oxidation
4354617115L-serine+oxidation
4354617716lactose+oxidation
4354617306maltose+oxidation
4354628053melibiose+oxidation
4354637657methyl D-glucoside+oxidation
4354617268myo-inositol+oxidation
4354663154N-acetyl-beta-D-mannosamine+oxidation
43546506227N-acetylglucosamine+oxidation
4354617272propionate+oxidation
4354616634raffinose+oxidation
4354617814salicin+oxidation
4354617164stachyose+oxidation
4354617992sucrose+oxidation
4354627082trehalose+oxidation
4354632528turanose+oxidation
4354653423tween 40+oxidation
4354617632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4354615688acetoinno
4354616136hydrogen sulfideno
4354635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testcitrate test
4354615688acetoin-
4354616947citrate-

enzymes

@refvalueactivityec
43546catalase+1.11.1.6
43546cytochrome oxidase-1.9.3.1
43546arginine dihydrolase-3.5.3.6
43546lysine decarboxylase-4.1.1.18
43546ornithine decarboxylase-4.1.1.17
43546tryptophan deaminase-4.1.99.1
43546gelatinase+
43546alkaline phosphatase+3.1.3.1
43546esterase (C 4)+
43546N-acetyl-beta-glucosaminidase+3.2.1.52
43546esterase Lipase (C 8)-
43546lipase (C 14)-
43546leucine arylamidase-3.4.11.1
43546valine arylamidase-
43546cystine arylamidase-3.4.11.3
43546trypsin-3.4.21.4
43546alpha-chymotrypsin-3.4.21.1
43546acid phosphatase-3.1.3.2
43546naphthol-AS-BI-phosphohydrolase-
43546alpha-galactosidase-3.2.1.22
43546beta-galactosidase-3.2.1.23
43546beta-glucuronidase-3.2.1.31
43546alpha-glucosidase-3.2.1.20
43546beta-glucosidase-3.2.1.21
43546alpha-mannosidase-3.2.1.24
43546alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43546C16:1ω7c / C16:1ω6c0.6
    43546C17:01.8
    43546C18-1ω7c69.5
    43546C18:00.9
    43546C18:01.5
    4354611-methyl C18:1ω7c25.5
  • type of FA analysis: whole cell analysis
  • incubation medium: MA supplemented 3& (w/v) NaCl
  • agar/liquid: agar
  • incubation temperature: 37
  • incubation time: 2
  • incubation pH: 7
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43546marine salternWendengChinaCHNAsia36.965122.011
67771From marine saltern sedimentWendengChinaCHNAsia36.9657122.011

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline
#Engineered#Industrial#Industrial production
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_93357.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_38421;97_48898;98_64208;99_93357&stattab=map
  • Last taxonomy: Lentibacillus sediminis subclade
  • 16S sequence: KX815122
  • Sequence Identity:
  • Total samples: 469
  • soil counts: 133
  • aquatic counts: 89
  • animal counts: 214
  • plant counts: 33

Sequence information

16S sequences

  • @ref: 43546
  • description: Lentibacillus sediminis strain 0W14 16S ribosomal RNA gene, partial sequence
  • accession: KX815122
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lentibacillus sediminis 0W142791354936draftimg1940529
67771Lentibacillus sediminis 0W14GCA_002763455contigncbi1940529

GC content

@refGC-contentmethod
4354644.8genome sequence analysis
6777144.8

External links

@ref: 43546

culture collection no.: KCTC 33835, MCCC 1H00171

literature

  • topic: Phylogeny
  • Pubmed-ID: 28895514
  • title: Lentibacillus sediminis sp. nov., isolated from a marine saltern.
  • authors: Guo LY, Wang NN, Wang XQ, Chen GJ, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002228
  • year: 2017
  • mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43546Ling-Yun Guo, Nan-Nan Wang, Xiao-Qun Wang, Guan-Jun Chen, Zong-Jun DuLentibacillus sediminis sp. nov., isolated from a marine saltern10.1099/ijsem.0.002228IJSEM 67: 3946-3950 201728895514
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/