Strain identifier

BacDive ID: 140548

Type strain: Yes

Species: Roseomonas suffusca

Strain Designation: S1

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; S1.

NCBI tax ID(s): 1783357 (species)

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General

@ref: 43337

BacDive-ID: 140548

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Roseomonas suffusca S1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from lagoon sediments.

NCBI tax id

  • NCBI tax id: 1783357
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; S1.

doi: 10.13145/bacdive140548.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas suffusca
  • full scientific name: Roseomonas suffusca Subhash and Lee 2017

  • synonyms

    • @ref: 20215
    • synonym: Pseudoroseomonas suffusca

@ref: 43337

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas suffusca

strain designation: S1

type strain: yes

Morphology

cell morphology

  • @ref: 43337
  • gram stain: negative
  • cell length: 1.0-1.2 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43337
  • colony color: light-brown
  • medium used: Subhash´s liquid medium

pigmentation

  • @ref: 43337
  • production: yes
  • name: Carotenoid pigment

Culture and growth conditions

culture medium

  • @ref: 43337
  • name: Subhash's liquid medium
  • growth: yes
  • composition: KH2PO4 (0.2 g/L), NH4Cl (0.25 g/L), KCl (0.5 g/L), CaCl2.2H20 (0.15 g/L), NaCl (1), MgCl2.6H2O (0.62 g/L), Na2SO4 (2.84 g/L), HEPES (2.83 g/L), yeast extract (3.0 g/L), peptone (3.0 g/L), casamino acids (0.5 g/L), dextrose (0.5 g/L) and sodium pyruvate (3.0 g/L)

culture temp

@refgrowthtypetemperaturerange
43337positiveoptimum30-35mesophilic
43337positivegrowth13-42
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43337positivegrowth6.5-9.1alkaliphile
43337positiveoptimum7.0-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43337
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43337NaClpositiveoptimum0.5 %(w/v)
43337NaClpositivegrowth0-3.5 %(w/v)

observation

  • @ref: 43337
  • observation: Quinone Q-10

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
43337casein+hydrolysis
43337urea+hydrolysis16199
43337tween 20+hydrolysis53424
43337starch-hydrolysis28017
43337chitin-hydrolysis17029
43337carboxymethylcellulose-hydrolysis85146
43337esculin-hydrolysis4853
43337gelatin-hydrolysis5291
43337tween 80-hydrolysis53426
43337nitrate-reduction17632
43337D-glucose+carbon source17634
43337maltose hydrate+carbon source
43337L-rhamnose+carbon source62345
43337D-sorbitol+carbon source17924
43337lactose+carbon source17716
43337sucrose+carbon source17992
43337glycyl-L-bromosuccinic glutamic acid+carbon source
43337D-alanine+carbon source15570
43337L-arabinose+carbon source30849
43337pyruvate+carbon source15361
43337D-fructose-carbon source15824
43337cellobiose-carbon source17057
43337D-galactose-carbon source12936
43337D-mannitol-carbon source16899
43337D-ribose-carbon source16988
43337trehalose-carbon source27082
43337raffinose-carbon source16634
43337aspartate-carbon source35391
43337D-glucose+builds acid from17634
43337D-fructose+builds acid from15824
43337maltose+builds acid from17306
43337sucrose+builds acid from17992
43337L-arabinose+builds acid from30849
43337cellobiose-builds acid from17057
43337D-galactose-builds acid from12936
43337L-rhamnose-builds acid from62345
43337melibiose-builds acid from28053
43337raffinose-builds acid from16634
43337ammonium+nitrogen source28938

metabolite production

@refChebi-IDmetaboliteproduction
4333715688acetoinno
4333716136hydrogen sulfideno
4333735581indoleno

metabolite tests

  • @ref: 43337
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
43337catalase+1.11.1.6
43337cytochrome oxidase+1.9.3.1
43337arginine decarboxylase-4.1.1.19
43337lysine decarboxylase-4.1.1.18
43337esterase (C 4)+
43337esterase Lipase (C 8)+
43337leucine arylamidase+3.4.11.1
43337trypsin+3.4.21.4
43337valine arylamidase+
43337alpha-chymotrypsin+3.4.21.1
43337beta-galactosidase+3.2.1.23
43337alpha-mannosidase+3.2.1.24
43337alpha-glucosidase+3.2.1.20
43337alpha-fucosidase+3.2.1.51
43337alkaline phosphatase-3.1.3.1
43337lipase (C 14)-
43337cystine arylamidase-3.4.11.3
43337acid phosphatase-3.1.3.2
43337naphthol-AS-BI-phosphohydrolase-
43337alpha-galactosidase-3.2.1.22
43337beta-glucuronidase-3.2.1.31
43337beta-glucosidase-3.2.1.21
43337N-acetyl-beta-glucosaminidase-3.2.1.52

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
43337lagoon sediments2015-09North Carolina StateUSAUSANorth America35-77Subhash's agarKH2PO4 (0.2 g/L), NH4Cl (0.25 g/L), KCl (0.5 g/L), CaCl2.2H20 (0.15 g/L), NaCl (1), MgCl2.6H2O (0.62 g/L), Na2SO4 (2.84 g/L), HEPES (2.83 g/L), yeast extract (3.0 g/L), peptone (3.0 g/L), casamino acids (0.5 g/L), dextrose (0.5 g/L) and sodium pyruvate (3.0 g/L)5 days30
67770Lagoon sedimentsNCUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_16489.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1135;97_4623;98_5935;99_16489&stattab=map
  • Last taxonomy: Roseomonas
  • 16S sequence: LT009497
  • Sequence Identity:
  • Total samples: 280
  • soil counts: 28
  • aquatic counts: 48
  • animal counts: 149
  • plant counts: 55

Sequence information

16S sequences

  • @ref: 43337
  • description: 16S rRNA gene sequence
  • accession: LT009497
  • database: nuccore

GC content

  • @ref: 43337
  • GC-content: 70.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43337

culture collection no.: KEMB 563-465, JCM 31176

literature

  • topic: Phylogeny
  • Pubmed-ID: 28714843
  • title: Roseomonas suffusca sp. nov., isolated from lagoon sediments.
  • authors: Subhash Y, Lee SS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001966
  • year: 2017
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Methylobacteriaceae/*classification/genetics/isolation & purification, North Carolina, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43337Y. Subhash, Sang-Seob LeeRoseomonas suffusca sp. nov., isolated from lagoon sediments10.1099/ijsem.0.001966IJSEM 67: 2390-2396 201728714843
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/