Strain identifier

BacDive ID: 140491

Type strain: Yes

Species: Nocardia shinanonensis

Culture col. no.: TBRC 5149, NBRC 109590, IFM 11456

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General

@ref: 43123

BacDive-ID: 140491

keywords: gram-positive, thermophilic, aerobe, Bacteria, 16S sequence

description: Nocardia shinanonensis TBRC 5149 is an aerobe, thermophilic, gram-positive bacterium that builds an aerial mycelium and was isolated from aqueous humor of a patient with endophthalmitis.

doi: 10.13145/bacdive140491.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia shinanonensis
  • full scientific name: Nocardia shinanonensis Matsumoto et al. 2016

@ref: 43123

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia shinanonensis

type strain: yes

Morphology

cell morphology

  • @ref: 43123
  • gram stain: positive
  • motility: no

multicellular morphology

  • @ref: 43123
  • forms multicellular complex: yes
  • complex name: aerial mycelium
  • complex color: white
  • further description: mycelium fragments into irregular rod-shaped elements

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
43123positivegrowth45thermophilic
43123positivegrowth35mesophilic
43123positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 43123
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4312317234glucose+builds acid from
4312317268myo-inositol+builds acid from
4312315963ribitol-builds acid from
4312330849L-arabinose-builds acid from
4312317113erythritol-builds acid from
4312328260galactose-builds acid from
4312317306maltose-builds acid from
4312362345L-rhamnose-builds acid from
4312330911sorbitol-builds acid from
4312337684mannose-builds acid from
4312329864mannitol-builds acid from
4312316947citrate+carbon source
4312317128adipate-carbon source
4312324265gluconate-carbon source
4312316199urea+hydrolysis
4312316708adenine-hydrolysis
43123casein-hydrolysis
4312317368hypoxanthine-hydrolysis
4312318186tyrosine-hydrolysis
4312315318xanthine-hydrolysis

Isolation, sampling and environmental information

isolation

  • @ref: 43123
  • sample type: aqueous humor of a patient with endophthalmitis
  • geographic location: Matsumoto, Nagano
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • enrichment culture: 5 % sheep blood agar
  • enrichment culture duration: 3 days
  • enrichment culture temperature: 37

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids
#Host Body-Site#Organ#Eye
#Infection#Inflammation
#Infection#Patient

Sequence information

16S sequences

  • @ref: 43123
  • description: Nocardia shinanonensis gene for 16S ribosomal RNA, partial sequence, strain: IFM 11456
  • accession: LC103184
  • length: 1474
  • database: nuccore
  • NCBI tax ID: 1769161

GC content

  • @ref: 43123
  • GC-content: 69.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43123

culture collection no.: TBRC 5149, NBRC 109590, IFM 11456

Reference

@idauthorstitledoi/urljournal
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
43123Takehisa Matsumoto, Tatsuya Negishi, Moriyuki Hamada, Hisayuki Komaki, Tohru Gonoi, Takashi YaguchiNocardia shinanonensis sp. nov., isolated from a patient with endophthalmitis10.1099/ijsem.0.001197IJSEM 66: 3324-3328 2016