Strain identifier
BacDive ID: 140323
Type strain: 
Species: Intestinimonas massiliensis
Strain Designation: GD2
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; GD2 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière {2015}
NCBI tax ID(s): 1673721 (species)
version 8.1 (current version)
General
@ref: 42930
BacDive-ID: 140323
DSM-Number: 100417
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Intestinimonas massiliensis GD2 is an anaerobe, mesophilic bacterium that was isolated from human stool specimen.
NCBI tax id
- NCBI tax id: 1673721
- Matching level: species
strain history
- @ref: 42930
- history: <- S. Khelaifia, Timone Hospital, Marseille, France; GD2 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière {2015}
doi: 10.13145/bacdive140323.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Intestinimonas
- species: Intestinimonas massiliensis
- full scientific name: Intestinimonas massiliensis Afouda et al. 2020
synonyms
- @ref: 20215
- synonym: Intestinimonas massiliensis
@ref: 42930
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridia, not assigned to order
family: Oscillospiraceae
genus: Intestinimonas
species: Intestinimonas massiliensis
full scientific name: Intestinimonas massiliensis Durand et al. 2017
strain designation: GD2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.36 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 42930
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 42930
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 100
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 99 |
| 69480 | no | 99.965 |
Isolation, sampling and environmental information
isolation
- @ref: 42930
- sample type: human stool specimen
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Infection | #Patient | #Specimen |
taxonmaps
- @ref: 69479
- File name: preview.99_6815.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_91;96_3214;97_3944;98_5023;99_6815&stattab=map
- Last taxonomy: Intestinimonas
- 16S sequence: LN866996
- Sequence Identity:
- Total samples: 36790
- soil counts: 168
- aquatic counts: 402
- animal counts: 36121
- plant counts: 99
Sequence information
16S sequences
- @ref: 42930
- description: Intestinimonas sp. GD2 partial 16S rRNA gene, strain GD2
- accession: LN866996
- length: 1519
- database: ena
- NCBI tax ID: 1673721
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Intestinimonas massiliensis GD2 | GCA_001244995 | scaffold | ncbi | 1673721 |
| 66792 | Intestinimonas massiliensis GD2 | 2775506863 | draft | img | 1673721 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| motile | no | 89.588 | no |
| flagellated | no | 95.433 | no |
| gram-positive | yes | 73.889 | no |
| anaerobic | yes | 99.161 | no |
| aerobic | no | 97.352 | no |
| halophile | no | 85.202 | no |
| spore-forming | no | 76.611 | no |
| thermophile | no | 96.87 | yes |
| glucose-util | yes | 84.71 | no |
| glucose-ferment | yes | 64.735 | no |
External links
@ref: 42930
culture collection no.: DSM 100417, CSUR P1930
straininfo link
- @ref: 96627
- straininfo: 404878
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42930 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100417 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100417) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96627 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404878.1 |