Intestinimonas massiliensis (DSM 100417, CSUR P1930, GD2)

Name: Intestinimonas massiliensis (DSM 100417, CSUR P1930, GD2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140323

Type strain

Strain Designation GD2

Culture col. no. DSM 100417 CSUR P1930 GD2

NCBI tax ID(s) 1673721

Special Collections DSMZ Cadoret human gut

Links

Intestinimonas massiliensis GD2 is a mesophilic prokaryote that was isolated from human stool specimen.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404878

DSM 100417

@ref 20215

Last LPSN update 2025-12-16 10:03:34

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Intestinimonas

Species Intestinimonas massiliensis

Full scientific name Intestinimonas massiliensis Afouda et al. 2020

Synonyms (1)

"Intestinimonas massiliensis"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42930	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42930	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body Product	#Gastrointestinal tract
#Infection	#Patient

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
42930	human stool specimen	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence LN866996 (>99% sequence identity) for Intestinimonas from Microbeatlas

Aquatic Samples	402
Soil Samples	168
Animal Samples	36121
Plant Samples	99
Total Samples	36790

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Intestinimonas massiliensis assembly for Intestinimonas massiliensis (ex Afouda et al. 2020) GD2	scaffold	GCA_001244995	1673721.57	2775506863	1673721	75.99

Genome browser: GCA_001244995

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42930	Intestinimonas sp. GD2 partial 16S rRNA gene, strain GD2	LN866996	1519		1673721

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Intestinimonas massiliensis GD2
NCBI: GCA_001244995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.80	no
125439	motility	BacteriaNetⓘ	no	57.00	no
125439	gram_stain	BacteriaNetⓘ	negative	88.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Intestinimonas massiliensis GD2
NCBI: GCA_001244995.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.74	no
125438	anaerobic	anaerobicⓘ	yes	86.87	no
125438	aerobic	aerobicⓘ	no	90.38	no
125438	spore-forming	spore-formingⓘ	no	57.92	no
125438	thermophilic	thermophileⓘ	no	90.93	no
125438	flagellated	motile2+ⓘ	no	87.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2^T , the second Intestinimonas species cultured from the human gut.	Afouda P, Durand GA, Lagier JC, Labas N, Cadoret F, Armstrong N, Raoult D, Dubourg G.	Microbiologyopen	10.1002/mbo3.621	2019
Genetics	"Intestinimonas massiliensis" sp. nov, a new bacterium isolated from human gut.	Durand G, Afouda P, Raoult D, Dubourg G.	New Microbes New Infect	10.1016/j.nmni.2016.09.014	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42930	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100417
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Intestinimonas massiliensis (DSM 100417, CSUR P1930, GD2)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001244995

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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